Wall clock time and date at job start Sun Mar 29 2020 22:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47240 * 2 1 4 4 H 1.09002 * 109.46855 * 305.63469 * 3 2 1 5 5 C 1.50697 * 109.47474 * 185.63459 * 3 2 1 6 6 H 1.08000 * 119.99356 * 335.19785 * 5 3 2 7 7 C 1.37872 * 120.00472 * 155.19711 * 5 3 2 8 8 N 1.31516 * 119.99649 * 355.29868 * 7 5 3 9 9 Si 1.86797 * 120.00063 * 175.30313 * 7 5 3 10 10 H 1.48492 * 109.47433 * 89.99954 * 9 7 5 11 11 H 1.48500 * 109.47197 * 329.99837 * 9 7 5 12 12 H 1.48505 * 109.46993 * 210.00003 * 9 7 5 13 13 N 1.46899 * 109.47392 * 65.62925 * 3 2 1 14 14 C 1.46899 * 111.00077 * 275.00405 * 13 3 2 15 15 C 1.53835 * 113.65626 * 252.20876 * 14 13 3 16 16 C 1.51584 * 86.76019 * 220.73222 * 15 14 13 17 17 O 1.20756 * 135.78495 * 205.16231 * 16 15 14 18 18 C 1.51586 * 88.43207 * 25.15419 * 16 15 14 19 19 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47278 * 300.00004 * 1 2 3 21 21 H 1.09001 * 109.47165 * 60.00515 * 1 2 3 22 22 H 1.09004 * 109.46917 * 239.99935 * 2 1 3 23 23 H 1.08998 * 109.46520 * 119.99836 * 2 1 3 24 24 H 0.97000 * 120.00164 * 5.26818 * 8 7 5 25 25 H 1.00904 * 110.99839 * 38.95664 * 13 3 2 26 26 H 1.08999 * 112.88417 * 23.66696 * 14 13 3 27 27 H 1.09004 * 113.67172 * 335.19838 * 15 14 13 28 28 H 1.08997 * 113.66756 * 106.26542 * 15 14 13 29 29 H 1.08999 * 113.66907 * 220.37830 * 18 16 15 30 30 H 1.09000 * 113.74903 * 89.32346 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5966 1.9846 -0.8353 5 6 3.5405 1.4448 -0.1395 6 1 4.1132 0.5842 0.1732 7 6 4.1823 2.5455 -0.6663 8 7 3.4803 3.5553 -1.1322 9 14 6.0487 2.6024 -0.7183 10 1 6.5262 2.0213 -1.9986 11 1 6.5996 1.8192 0.4168 12 1 6.5040 4.0121 -0.6142 13 7 1.6645 2.0947 1.2615 14 6 0.3035 2.6424 1.1862 15 6 0.2598 4.1780 1.1050 16 6 -0.9174 4.1091 2.0575 17 8 -1.8688 4.8087 2.3096 18 6 -0.3827 2.7812 2.5561 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.5151 3.5603 -1.0363 25 1 1.7555 1.4578 2.0389 26 1 -0.3125 2.1455 0.4368 27 1 1.1383 4.6639 1.5295 28 1 0.0009 4.5566 0.1162 29 1 -1.1583 2.0363 2.7345 30 1 0.3156 2.8736 3.3880 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152846.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:08 Heat of formation + Delta-G solvation = -17.941692 kcal Electronic energy + Delta-G solvation = -12790.070675 eV Core-core repulsion = 10586.110175 eV Total energy + Delta-G solvation = -2203.960500 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.68153 -37.17719 -34.78801 -32.12383 -29.89718 -26.40864 -25.74258 -23.06661 -21.28908 -20.32069 -18.60423 -16.79029 -15.90126 -15.50152 -14.99737 -14.20886 -13.80153 -13.68137 -13.27927 -12.88384 -12.36975 -12.18837 -11.74771 -11.31707 -11.11232 -10.79795 -10.72960 -10.54130 -10.21159 -10.10788 -9.62775 -9.11708 -8.66914 -8.30987 -7.21706 -6.30309 -4.04819 2.12298 3.44876 3.49699 3.64737 4.22569 4.55131 4.80728 5.07712 5.16321 5.42576 5.59559 5.67293 5.70786 5.82544 5.91682 5.93012 6.03221 6.24678 6.40916 6.47767 6.50300 6.68434 6.89897 7.10720 7.73279 8.01576 8.32621 8.46273 8.60249 8.93306 9.73141 11.08878 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.011073 C = 0.009176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.526513 B = 2528.002145 C = 3050.833046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.141 4.141 3 C 0.195 3.805 4 H 0.042 0.958 5 C -0.585 4.585 6 H 0.045 0.955 7 C 0.034 3.966 8 N -0.902 5.902 9 Si 1.069 2.931 10 H -0.291 1.291 11 H -0.290 1.290 12 H -0.286 1.286 13 N -0.656 5.656 14 C 0.061 3.939 15 C -0.175 4.175 16 C 0.357 3.643 17 O -0.446 6.446 18 C -0.200 4.200 19 H 0.039 0.961 20 H 0.053 0.947 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.274 0.726 25 H 0.323 0.677 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.948 -3.396 4.311 7.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.181 4.181 3 C 0.089 3.911 4 H 0.060 0.940 5 C -0.625 4.625 6 H 0.064 0.936 7 C -0.173 4.173 8 N -0.537 5.537 9 Si 0.898 3.102 10 H -0.218 1.218 11 H -0.216 1.216 12 H -0.211 1.211 13 N -0.287 5.287 14 C -0.050 4.050 15 C -0.214 4.214 16 C 0.232 3.768 17 O -0.319 6.319 18 C -0.238 4.238 19 H 0.059 0.941 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.142 0.858 26 H 0.097 0.903 27 H 0.142 0.858 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.876 -1.526 3.751 5.605 hybrid contribution -1.752 -1.870 0.602 2.633 sum -5.628 -3.396 4.353 7.884 Atomic orbital electron populations 1.22117 0.98400 1.00166 1.01072 1.22248 0.93106 1.01644 1.01081 1.19470 0.96432 0.87432 0.87814 0.93965 1.21802 0.90843 1.03412 1.46403 0.93619 1.25705 1.06478 0.92571 0.92539 1.70712 1.09336 1.32524 1.41175 0.83568 0.74696 0.75927 0.76043 1.21751 1.21586 1.21137 1.61584 1.17978 1.41616 1.07539 1.22896 0.92745 0.94818 0.94575 1.24117 0.97930 0.99081 1.00268 1.25840 0.84067 0.85494 0.81353 1.90356 1.29444 1.51434 1.60643 1.24347 1.01124 0.97558 1.00778 0.94144 0.92843 0.93339 0.92399 0.93386 0.91486 0.85837 0.90344 0.85782 0.89805 0.90017 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 8.50 37.16 0.32 -2.27 16 2 C -0.14 -2.75 5.38 -26.73 -0.14 -2.89 16 3 C 0.19 4.45 1.88 -68.87 -0.13 4.32 16 4 H 0.04 1.07 6.38 -51.93 -0.33 0.74 16 5 C -0.59 -15.54 8.64 -34.44 -0.30 -15.83 16 6 H 0.05 1.22 7.81 -52.49 -0.41 0.81 16 7 C 0.03 0.94 5.45 -17.82 -0.10 0.84 16 8 N -0.90 -26.10 13.63 55.43 0.76 -25.35 16 9 Si 1.07 24.65 29.91 -169.99 -5.08 19.57 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.66 -13.19 6.25 -100.13 -0.63 -13.82 16 14 C 0.06 1.03 2.53 -66.93 -0.17 0.86 16 15 C -0.18 -3.01 7.85 -27.01 -0.21 -3.22 16 16 C 0.36 5.79 9.14 -28.25 -0.26 5.53 16 17 O -0.45 -8.31 17.99 6.00 0.11 -8.20 16 18 C -0.20 -2.82 7.61 -27.01 -0.21 -3.03 16 19 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.81 5.58 -51.93 -0.29 0.52 16 21 H 0.05 0.79 7.93 -51.93 -0.41 0.37 16 22 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 23 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 24 H 0.27 7.82 6.66 -40.82 -0.27 7.55 16 25 H 0.32 6.04 8.22 -39.29 -0.32 5.72 16 26 H 0.08 1.34 5.13 -51.93 -0.27 1.07 16 27 H 0.12 2.25 8.14 -51.93 -0.42 1.83 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 250.68 15.07 3.78 3.78 Total: -1.00 -28.96 250.68 -6.32 -35.28 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.05 Total: 4.44 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -1.20 Total: -15.70 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.13 Total: -39.17 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.11 Total: -8.20 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.57 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.96 -6.32 -35.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152846.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.338 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds