Wall clock time and date at job start Sun Mar 29 2020 22:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47240 * 2 1 4 4 H 1.09002 * 109.46855 * 305.63469 * 3 2 1 5 5 C 1.50697 * 109.47474 * 185.63459 * 3 2 1 6 6 H 1.08000 * 119.99356 * 335.19785 * 5 3 2 7 7 C 1.37872 * 120.00472 * 155.19711 * 5 3 2 8 8 N 1.31516 * 119.99649 * 355.29868 * 7 5 3 9 9 Si 1.86797 * 120.00063 * 175.30313 * 7 5 3 10 10 H 1.48492 * 109.47433 * 89.99954 * 9 7 5 11 11 H 1.48500 * 109.47197 * 329.99837 * 9 7 5 12 12 H 1.48505 * 109.46993 * 210.00003 * 9 7 5 13 13 N 1.46899 * 109.47392 * 65.62925 * 3 2 1 14 14 C 1.46899 * 111.00077 * 275.00405 * 13 3 2 15 15 C 1.53835 * 113.65626 * 252.20876 * 14 13 3 16 16 C 1.51584 * 86.76019 * 220.73222 * 15 14 13 17 17 O 1.20756 * 135.78495 * 205.16231 * 16 15 14 18 18 C 1.51586 * 88.43207 * 25.15419 * 16 15 14 19 19 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47278 * 300.00004 * 1 2 3 21 21 H 1.09001 * 109.47165 * 60.00515 * 1 2 3 22 22 H 1.09004 * 109.46917 * 239.99935 * 2 1 3 23 23 H 1.08998 * 109.46520 * 119.99836 * 2 1 3 24 24 H 0.97000 * 120.00164 * 5.26818 * 8 7 5 25 25 H 1.00904 * 110.99839 * 38.95664 * 13 3 2 26 26 H 1.08999 * 112.88417 * 23.66696 * 14 13 3 27 27 H 1.09004 * 113.67172 * 335.19838 * 15 14 13 28 28 H 1.08997 * 113.66756 * 106.26542 * 15 14 13 29 29 H 1.08999 * 113.66907 * 220.37830 * 18 16 15 30 30 H 1.09000 * 113.74903 * 89.32346 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5966 1.9846 -0.8353 5 6 3.5405 1.4448 -0.1395 6 1 4.1132 0.5842 0.1732 7 6 4.1823 2.5455 -0.6663 8 7 3.4803 3.5553 -1.1322 9 14 6.0487 2.6024 -0.7183 10 1 6.5262 2.0213 -1.9986 11 1 6.5996 1.8192 0.4168 12 1 6.5040 4.0121 -0.6142 13 7 1.6645 2.0947 1.2615 14 6 0.3035 2.6424 1.1862 15 6 0.2598 4.1780 1.1050 16 6 -0.9174 4.1091 2.0575 17 8 -1.8688 4.8087 2.3096 18 6 -0.3827 2.7812 2.5561 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.5151 3.5603 -1.0363 25 1 1.7555 1.4578 2.0389 26 1 -0.3125 2.1455 0.4368 27 1 1.1383 4.6639 1.5295 28 1 0.0009 4.5566 0.1162 29 1 -1.1583 2.0363 2.7345 30 1 0.3156 2.8736 3.3880 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152846.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:08 Heat of formation + Delta-G solvation = -37.301072 kcal Electronic energy + Delta-G solvation = -12790.910161 eV Core-core repulsion = 10586.110175 eV Total energy + Delta-G solvation = -2204.799986 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.06607 -38.71338 -36.36180 -34.04000 -31.41725 -28.18031 -27.05196 -24.88942 -22.72757 -22.00307 -19.98507 -18.72526 -17.38119 -16.83910 -16.38972 -15.71572 -15.54887 -15.36506 -14.93515 -14.33128 -14.11929 -13.48009 -13.24936 -12.87309 -12.62056 -12.54840 -12.26061 -12.03602 -11.90815 -11.64230 -11.38333 -10.62440 -10.44784 -10.34319 -8.83493 -8.42441 -6.18464 0.80355 1.58527 1.66642 1.83279 2.64664 2.90845 3.26962 3.49790 3.82998 3.90179 4.13501 4.23654 4.32530 4.48859 4.56701 4.65730 4.71618 4.87148 4.89439 5.02714 5.06791 5.16845 5.34501 5.46424 6.10401 6.31565 6.41729 6.67184 6.87841 6.96030 7.66499 8.95613 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.011073 C = 0.009176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.526513 B = 2528.002145 C = 3050.833046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C 0.198 3.802 4 H 0.011 0.989 5 C -0.596 4.596 6 H 0.039 0.961 7 C -0.016 4.016 8 N -0.932 5.932 9 Si 1.110 2.890 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.290 1.290 13 N -0.666 5.666 14 C 0.058 3.942 15 C -0.184 4.184 16 C 0.369 3.631 17 O -0.469 6.469 18 C -0.172 4.172 19 H 0.064 0.936 20 H 0.066 0.934 21 H 0.042 0.958 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.264 0.736 25 H 0.334 0.666 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.406 -4.585 5.568 9.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 C 0.090 3.910 4 H 0.029 0.971 5 C -0.635 4.635 6 H 0.057 0.943 7 C -0.216 4.216 8 N -0.570 5.570 9 Si 0.935 3.065 10 H -0.206 1.206 11 H -0.200 1.200 12 H -0.216 1.216 13 N -0.298 5.298 14 C -0.053 4.053 15 C -0.223 4.223 16 C 0.246 3.754 17 O -0.344 6.344 18 C -0.209 4.209 19 H 0.083 0.917 20 H 0.085 0.915 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.154 0.846 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.338 -2.740 5.018 7.177 hybrid contribution -1.631 -1.522 0.205 2.240 sum -5.969 -4.263 5.222 9.004 Atomic orbital electron populations 1.22018 0.95513 1.01904 1.01462 1.22107 0.95673 0.99001 1.00744 1.19246 0.94438 0.89327 0.87953 0.97093 1.22197 0.93080 1.02762 1.45499 0.94301 1.26903 1.09923 0.92474 0.92343 1.70818 1.08917 1.33749 1.43474 0.83012 0.70720 0.75834 0.76981 1.20603 1.19974 1.21611 1.61137 1.20420 1.41699 1.06546 1.22871 0.91405 0.94078 0.96944 1.24166 0.98393 0.99460 1.00271 1.25793 0.82914 0.86105 0.80610 1.90359 1.30209 1.52550 1.61256 1.24179 1.01270 0.96324 0.99166 0.91719 0.91485 0.93930 0.93847 0.92601 0.92565 0.84640 0.90026 0.86977 0.90885 0.87004 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 8.50 71.98 0.61 -3.89 16 2 C -0.14 -5.09 5.38 30.59 0.16 -4.92 16 3 C 0.20 9.00 1.88 44.17 0.08 9.08 16 4 H 0.01 0.57 6.38 -2.39 -0.02 0.55 16 5 C -0.60 -31.72 8.64 25.60 0.22 -31.50 16 6 H 0.04 2.07 7.81 -2.91 -0.02 2.05 16 7 C -0.02 -0.86 5.45 84.65 0.46 -0.40 16 8 N -0.93 -55.06 13.63 21.45 0.29 -54.77 16 9 Si 1.11 49.69 29.91 68.60 2.05 51.74 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 13 N -0.67 -26.03 6.25 -470.71 -2.94 -28.97 16 14 C 0.06 1.87 2.53 45.43 0.11 1.98 16 15 C -0.18 -6.27 7.85 30.41 0.24 -6.03 16 16 C 0.37 11.29 9.14 29.61 0.27 11.56 16 17 O -0.47 -16.78 17.99 -1.44 -0.03 -16.80 16 18 C -0.17 -4.25 7.61 30.41 0.23 -4.02 16 19 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 20 H 0.07 1.79 5.58 -2.39 -0.01 1.78 16 21 H 0.04 1.30 7.93 -2.39 -0.02 1.28 16 22 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.06 1.99 8.03 -2.39 -0.02 1.97 16 24 H 0.26 15.58 6.66 -92.71 -0.62 14.96 16 25 H 0.33 11.73 8.22 -89.69 -0.74 11.00 16 26 H 0.08 2.64 5.13 -2.39 -0.01 2.62 16 27 H 0.11 4.11 8.14 -2.38 -0.02 4.09 16 28 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -62.23 250.68 2.32 -59.91 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.55 Total: 17.04 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 2.40 Total: -28.14 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.65 Total: -83.74 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.03 Total: -16.80 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.05 Total: 51.74 kcal Total: -62.23 2.32 -59.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152846.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.614 kcal (2) G-P(sol) polarization free energy of solvation -62.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds