Wall clock time and date at job start Sun Mar 29 2020 21:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 H 1.08995 * 1 3 3 H 1.08998 * 109.47031 * 1 2 4 4 C 1.53004 * 109.47236 * 119.99846 * 1 2 3 5 5 C 1.52995 * 109.47273 * 179.97438 * 4 1 2 6 6 N 1.46902 * 109.47028 * 180.02562 * 5 4 1 7 7 C 1.46903 * 110.99695 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46831 * 204.99916 * 7 6 5 9 9 C 1.53005 * 109.46741 * 299.99923 * 8 7 6 10 10 C 1.53007 * 109.46981 * 299.99924 * 9 8 7 11 11 C 1.50700 * 109.46878 * 180.02562 * 10 9 8 12 12 N 1.27944 * 119.99829 * 335.00379 * 11 10 9 13 13 Si 1.86798 * 120.00187 * 154.99920 * 11 10 9 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 10 15 15 H 1.48493 * 109.47239 * 300.00322 * 13 11 10 16 16 H 1.48504 * 109.46636 * 59.99881 * 13 11 10 17 17 C 1.52996 * 109.46772 * 60.00447 * 10 9 8 18 18 C 1.52997 * 109.47389 * 299.99368 * 17 10 9 19 19 H 1.09005 * 109.46936 * 59.99737 * 4 1 2 20 20 H 1.09000 * 109.46893 * 300.00166 * 4 1 2 21 21 H 1.08996 * 109.47696 * 59.99670 * 5 4 1 22 22 H 1.09006 * 109.46729 * 299.99751 * 5 4 1 23 23 H 1.00901 * 110.99839 * 303.94552 * 6 5 4 24 24 H 1.09005 * 109.47296 * 324.99261 * 7 6 5 25 25 H 1.09000 * 109.47287 * 180.02562 * 8 7 6 26 26 H 1.08994 * 109.47455 * 59.99694 * 8 7 6 27 27 H 1.09002 * 109.46680 * 180.02562 * 9 8 7 28 28 H 1.08999 * 109.47329 * 60.00051 * 9 8 7 29 29 H 1.08999 * 109.47193 * 300.00210 * 10 9 8 30 30 H 0.97005 * 119.99714 * 180.02562 * 12 11 10 31 31 H 1.08999 * 109.47454 * 59.99924 * 17 10 9 32 32 H 1.09001 * 109.46631 * 179.97438 * 17 10 9 33 33 H 1.08999 * 109.47276 * 300.00665 * 18 17 10 34 34 H 1.08995 * 109.47486 * 180.02562 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 1 1.0900 0.0000 0.0000 3 1 -0.3633 1.0276 0.0000 4 6 -0.5100 -0.7212 -1.2493 5 6 -2.0400 -0.7218 -1.2490 6 7 -2.5296 -1.4148 -2.4481 7 6 -3.9981 -1.4355 -2.4814 8 6 -4.4725 -2.6241 -3.3199 9 6 -3.9319 -2.4911 -4.7450 10 6 -4.4463 -1.1909 -5.3663 11 6 -3.9143 -1.0601 -6.7702 12 7 -2.8293 -1.6522 -7.1008 13 14 -4.8389 -0.0338 -8.0277 14 1 -4.1127 -0.0652 -9.3225 15 1 -6.2041 -0.5881 -8.2116 16 1 -4.9344 1.3684 -7.5481 17 6 -3.9719 -0.0024 -4.5278 18 6 -4.5125 -0.1354 -3.1028 19 1 -0.1466 -1.7489 -1.2493 20 1 -0.1467 -0.2074 -2.1392 21 1 -2.4038 0.3057 -1.2487 22 1 -2.4029 -1.2360 -0.3590 23 1 -2.1545 -0.9962 -3.2861 24 1 -4.3833 -1.5303 -1.4661 25 1 -5.5622 -2.6393 -3.3450 26 1 -4.1061 -3.5503 -2.8773 27 1 -4.2702 -3.3376 -5.3425 28 1 -2.8423 -2.4757 -4.7203 29 1 -5.5359 -1.2063 -5.3910 30 1 -2.4867 -1.5677 -8.0044 31 1 -2.8823 0.0130 -4.5031 32 1 -4.3380 0.9239 -4.9707 33 1 -5.6021 -0.1507 -3.1275 34 1 -4.1749 0.7116 -2.5055 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256959929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:49 Heat of formation + Delta-G solvation = 9.534664 kcal Electronic energy + Delta-G solvation = -13200.785411 eV Core-core repulsion = 11133.849469 eV Total energy + Delta-G solvation = -2066.935942 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.26657 -35.94599 -33.54187 -30.66653 -30.30139 -27.66314 -23.56581 -22.52722 -22.04519 -19.72204 -18.70076 -18.23809 -16.66800 -15.65773 -14.79196 -14.22750 -14.15977 -13.76745 -13.33916 -13.06396 -12.49042 -12.23338 -11.99836 -11.82985 -11.63764 -11.39986 -10.89828 -10.80335 -10.51344 -10.27720 -10.04762 -9.85066 -9.59529 -8.80168 -8.45805 -8.20883 -7.47002 -3.38871 1.65847 1.83462 2.05331 2.48193 2.56349 4.47518 4.87875 4.98808 5.12263 5.19801 5.49382 5.56070 5.71129 5.73883 5.76288 5.85465 5.95700 6.18310 6.22927 6.35565 6.39462 6.51948 6.59599 6.75838 6.83791 6.85127 7.38090 7.71279 7.82553 7.88316 8.14808 8.29878 9.29827 9.43199 9.48868 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.044284 B = 0.009782 C = 0.009326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.136723 B = 2861.828334 C = 3001.702217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.745 4.745 2 H -0.060 1.060 3 H -0.062 1.062 4 C -0.028 4.028 5 C 0.085 3.915 6 N -0.689 5.689 7 C 0.083 3.917 8 C -0.107 4.107 9 C -0.099 4.099 10 C -0.057 4.057 11 C -0.002 4.002 12 N -0.623 5.623 13 Si 0.927 3.073 14 H -0.253 1.253 15 H -0.239 1.239 16 H -0.237 1.237 17 C -0.109 4.109 18 C -0.148 4.148 19 H 0.017 0.983 20 H -0.064 1.064 21 H 0.003 0.997 22 H 0.069 0.931 23 H 0.331 0.669 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.331 0.669 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.156 -2.821 -18.596 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.783 4.783 2 H -0.041 1.041 3 H -0.043 1.043 4 C -0.065 4.065 5 C -0.042 4.042 6 N -0.321 5.321 7 C -0.028 4.028 8 C -0.145 4.145 9 C -0.137 4.137 10 C -0.076 4.076 11 C -0.251 4.251 12 N -0.234 5.234 13 Si 0.744 3.256 14 H -0.176 1.176 15 H -0.161 1.161 16 H -0.160 1.160 17 C -0.148 4.148 18 C -0.187 4.187 19 H 0.035 0.965 20 H -0.046 1.046 21 H 0.021 0.979 22 H 0.087 0.913 23 H 0.151 0.849 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.147 0.853 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.814 -3.533 -18.495 25.244 hybrid contribution 0.307 2.073 -2.100 2.967 sum -16.507 -1.460 -20.595 26.434 Atomic orbital electron populations 1.36167 0.96263 1.06058 1.39860 1.04078 1.04339 1.20553 0.91052 0.97765 0.97083 1.21941 0.98505 0.93491 0.90274 1.60898 1.05236 1.59564 1.06382 1.21555 0.89831 0.92840 0.98568 1.21570 0.98785 0.98798 0.95341 1.21372 1.02894 0.94695 0.94713 1.20486 0.99729 0.97420 0.90013 1.30344 0.95945 0.96183 1.02656 1.68249 1.12102 1.19038 1.24056 0.85884 0.81047 0.81075 0.77595 1.17617 1.16146 1.15979 1.21490 1.01658 0.96601 0.95085 1.22187 1.00707 1.00057 0.95796 0.96475 1.04610 0.97876 0.91272 0.84941 0.90757 0.92673 0.91325 0.92732 0.89783 0.89797 0.85298 0.91295 0.92025 0.91726 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.75 -29.76 15.15 37.16 0.56 -29.20 16 2 H -0.06 -2.52 8.14 -51.93 -0.42 -2.94 16 3 H -0.06 -2.60 8.14 -51.93 -0.42 -3.02 16 4 C -0.03 -0.93 6.19 -26.73 -0.17 -1.10 16 5 C 0.09 2.32 5.48 -3.83 -0.02 2.30 16 6 N -0.69 -14.88 5.77 -106.72 -0.62 -15.50 16 7 C 0.08 1.40 2.86 -67.71 -0.19 1.20 16 8 C -0.11 -1.51 5.64 -26.73 -0.15 -1.66 16 9 C -0.10 -1.36 4.45 -26.72 -0.12 -1.48 16 10 C -0.06 -0.68 2.12 -91.77 -0.19 -0.88 16 11 C 0.00 -0.02 4.83 -13.90 -0.07 -0.09 16 12 N -0.62 -7.70 12.70 56.23 0.71 -6.99 16 13 Si 0.93 7.91 29.29 -169.99 -4.98 2.93 16 14 H -0.25 -2.20 7.11 56.52 0.40 -1.80 16 15 H -0.24 -1.98 7.11 56.52 0.40 -1.58 16 16 H -0.24 -2.18 7.11 56.52 0.40 -1.78 16 17 C -0.11 -1.49 4.88 -26.73 -0.13 -1.62 16 18 C -0.15 -2.17 5.52 -26.73 -0.15 -2.32 16 19 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 20 H -0.06 -2.17 8.14 -51.93 -0.42 -2.60 16 21 H 0.00 0.08 7.44 -51.93 -0.39 -0.30 16 22 H 0.07 1.87 8.05 -51.93 -0.42 1.46 16 23 H 0.33 7.11 5.57 -39.29 -0.22 6.89 16 24 H 0.07 1.28 7.80 -51.93 -0.40 0.88 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.39 6.86 -51.93 -0.36 1.04 16 29 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 30 H 0.33 3.36 8.23 -40.82 -0.34 3.03 16 31 H 0.07 1.11 6.26 -51.93 -0.32 0.79 16 32 H 0.06 0.72 7.95 -51.93 -0.41 0.31 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.05 7.46 -51.93 -0.39 0.67 16 LS Contribution 264.78 15.07 3.99 3.99 Total: -1.00 -40.03 264.78 -7.35 -47.38 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.83 Total: 3.02 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: -0.63 Total: -34.83 kcal Atomic # 7 Polarization: -22.59 SS G_CDS: 0.10 Total: -22.49 kcal Atomic # 14 Polarization: 7.91 SS G_CDS: -4.98 Total: 2.93 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -40.03 -7.35 -47.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256959929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.914 kcal (2) G-P(sol) polarization free energy of solvation -40.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds