Wall clock time and date at job start Sun Mar 29 2020 21:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 H 1.08995 * 1 3 3 H 1.08998 * 109.47031 * 1 2 4 4 C 1.53004 * 109.47236 * 119.99846 * 1 2 3 5 5 C 1.52995 * 109.47273 * 179.97438 * 4 1 2 6 6 N 1.46902 * 109.47028 * 180.02562 * 5 4 1 7 7 C 1.46903 * 110.99695 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46831 * 204.99916 * 7 6 5 9 9 C 1.53005 * 109.46741 * 299.99923 * 8 7 6 10 10 C 1.53007 * 109.46981 * 299.99924 * 9 8 7 11 11 C 1.50700 * 109.46878 * 180.02562 * 10 9 8 12 12 N 1.27944 * 119.99829 * 335.00379 * 11 10 9 13 13 Si 1.86798 * 120.00187 * 154.99920 * 11 10 9 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 10 15 15 H 1.48493 * 109.47239 * 300.00322 * 13 11 10 16 16 H 1.48504 * 109.46636 * 59.99881 * 13 11 10 17 17 C 1.52996 * 109.46772 * 60.00447 * 10 9 8 18 18 C 1.52997 * 109.47389 * 299.99368 * 17 10 9 19 19 H 1.09005 * 109.46936 * 59.99737 * 4 1 2 20 20 H 1.09000 * 109.46893 * 300.00166 * 4 1 2 21 21 H 1.08996 * 109.47696 * 59.99670 * 5 4 1 22 22 H 1.09006 * 109.46729 * 299.99751 * 5 4 1 23 23 H 1.00901 * 110.99839 * 303.94552 * 6 5 4 24 24 H 1.09005 * 109.47296 * 324.99261 * 7 6 5 25 25 H 1.09000 * 109.47287 * 180.02562 * 8 7 6 26 26 H 1.08994 * 109.47455 * 59.99694 * 8 7 6 27 27 H 1.09002 * 109.46680 * 180.02562 * 9 8 7 28 28 H 1.08999 * 109.47329 * 60.00051 * 9 8 7 29 29 H 1.08999 * 109.47193 * 300.00210 * 10 9 8 30 30 H 0.97005 * 119.99714 * 180.02562 * 12 11 10 31 31 H 1.08999 * 109.47454 * 59.99924 * 17 10 9 32 32 H 1.09001 * 109.46631 * 179.97438 * 17 10 9 33 33 H 1.08999 * 109.47276 * 300.00665 * 18 17 10 34 34 H 1.08995 * 109.47486 * 180.02562 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 1 1.0900 0.0000 0.0000 3 1 -0.3633 1.0276 0.0000 4 6 -0.5100 -0.7212 -1.2493 5 6 -2.0400 -0.7218 -1.2490 6 7 -2.5296 -1.4148 -2.4481 7 6 -3.9981 -1.4355 -2.4814 8 6 -4.4725 -2.6241 -3.3199 9 6 -3.9319 -2.4911 -4.7450 10 6 -4.4463 -1.1909 -5.3663 11 6 -3.9143 -1.0601 -6.7702 12 7 -2.8293 -1.6522 -7.1008 13 14 -4.8389 -0.0338 -8.0277 14 1 -4.1127 -0.0652 -9.3225 15 1 -6.2041 -0.5881 -8.2116 16 1 -4.9344 1.3684 -7.5481 17 6 -3.9719 -0.0024 -4.5278 18 6 -4.5125 -0.1354 -3.1028 19 1 -0.1466 -1.7489 -1.2493 20 1 -0.1467 -0.2074 -2.1392 21 1 -2.4038 0.3057 -1.2487 22 1 -2.4029 -1.2360 -0.3590 23 1 -2.1545 -0.9962 -3.2861 24 1 -4.3833 -1.5303 -1.4661 25 1 -5.5622 -2.6393 -3.3450 26 1 -4.1061 -3.5503 -2.8773 27 1 -4.2702 -3.3376 -5.3425 28 1 -2.8423 -2.4757 -4.7203 29 1 -5.5359 -1.2063 -5.3910 30 1 -2.4867 -1.5677 -8.0044 31 1 -2.8823 0.0130 -4.5031 32 1 -4.3380 0.9239 -4.9707 33 1 -5.6021 -0.1507 -3.1275 34 1 -4.1749 0.7116 -2.5055 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256959929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:49 Heat of formation + Delta-G solvation = -19.465608 kcal Electronic energy + Delta-G solvation = -13202.042957 eV Core-core repulsion = 11133.849469 eV Total energy + Delta-G solvation = -2068.193488 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46488 -37.19036 -35.15799 -32.20951 -31.62815 -29.47948 -24.89104 -24.36752 -23.45586 -21.28612 -20.65170 -19.70942 -17.58033 -17.06021 -16.08946 -15.62427 -15.36048 -14.94249 -14.58040 -14.56390 -13.81313 -13.44363 -13.28146 -13.14156 -12.94761 -12.57340 -12.28720 -12.17043 -11.90004 -11.61936 -11.42097 -11.31346 -11.26036 -11.03667 -10.88374 -9.63379 -9.23798 -6.66009 0.91844 1.14793 1.46173 1.80860 1.91042 3.36024 3.59125 3.91129 3.94402 4.06784 4.26552 4.40316 4.44718 4.46400 4.58981 4.67821 4.70570 4.77516 4.85761 4.90164 4.99658 5.16604 5.18141 5.27842 5.30432 5.37326 5.41881 5.54331 5.73411 6.03403 6.12080 6.24823 6.37907 6.58104 7.05996 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.044284 B = 0.009782 C = 0.009326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.136723 B = 2861.828334 C = 3001.702217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.761 4.761 2 H -0.094 1.094 3 H -0.086 1.086 4 C -0.031 4.031 5 C 0.108 3.892 6 N -0.688 5.688 7 C 0.075 3.925 8 C -0.099 4.099 9 C -0.097 4.097 10 C -0.059 4.059 11 C -0.013 4.013 12 N -0.659 5.659 13 Si 0.981 3.019 14 H -0.261 1.261 15 H -0.225 1.225 16 H -0.245 1.245 17 C -0.109 4.109 18 C -0.144 4.144 19 H 0.021 0.979 20 H -0.067 1.067 21 H -0.005 1.005 22 H 0.070 0.930 23 H 0.332 0.668 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.121 0.879 30 H 0.339 0.661 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.340 -3.195 -20.460 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 H -0.075 1.075 3 H -0.067 1.067 4 C -0.068 4.068 5 C -0.021 4.021 6 N -0.320 5.320 7 C -0.034 4.034 8 C -0.137 4.137 9 C -0.135 4.135 10 C -0.078 4.078 11 C -0.259 4.259 12 N -0.272 5.272 13 Si 0.796 3.204 14 H -0.185 1.185 15 H -0.147 1.147 16 H -0.168 1.168 17 C -0.148 4.148 18 C -0.182 4.182 19 H 0.040 0.960 20 H -0.049 1.049 21 H 0.013 0.987 22 H 0.089 0.911 23 H 0.151 0.849 24 H 0.090 0.910 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.139 0.861 30 H 0.156 0.844 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.002 -3.924 -20.355 28.806 hybrid contribution 1.358 2.176 -1.511 2.978 sum -18.643 -1.748 -21.867 28.788 Atomic orbital electron populations 1.36447 0.94123 1.05389 1.43945 1.07523 1.06683 1.20435 0.95836 0.96717 0.93788 1.21396 0.93822 0.93846 0.93057 1.60765 1.08903 1.58196 1.04157 1.21779 0.86369 0.95660 0.99639 1.21531 1.00915 0.96587 0.94635 1.21301 1.00722 0.96478 0.94966 1.20598 1.01796 0.95318 0.90102 1.30856 0.95836 0.96128 1.03123 1.68275 1.13298 1.20597 1.25055 0.85131 0.80517 0.79319 0.75447 1.18461 1.14694 1.16783 1.21479 0.99544 0.98694 0.95110 1.22135 1.02997 0.97453 0.95662 0.96016 1.04944 0.98720 0.91109 0.84854 0.91000 0.88894 0.92507 0.91540 0.93370 0.86103 0.84439 0.94723 0.89752 0.87834 0.94178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.76 -62.03 15.15 71.98 1.09 -60.94 16 2 H -0.09 -8.18 8.14 -2.39 -0.02 -8.20 16 3 H -0.09 -7.31 8.14 -2.39 -0.02 -7.33 16 4 C -0.03 -2.09 6.19 30.59 0.19 -1.90 16 5 C 0.11 5.83 5.48 86.30 0.47 6.30 16 6 N -0.69 -29.26 5.77 -491.55 -2.83 -32.10 16 7 C 0.08 2.36 2.86 44.92 0.13 2.49 16 8 C -0.10 -2.47 5.64 30.60 0.17 -2.30 16 9 C -0.10 -2.42 4.45 30.60 0.14 -2.28 16 10 C -0.06 -1.21 2.12 -11.54 -0.02 -1.23 16 11 C -0.01 -0.25 4.83 88.67 0.43 0.18 16 12 N -0.66 -15.56 12.70 24.11 0.31 -15.26 16 13 Si 0.98 13.16 29.29 68.60 2.01 15.17 16 14 H -0.26 -3.80 7.11 99.48 0.71 -3.09 16 15 H -0.22 -2.57 7.11 99.48 0.71 -1.86 16 16 H -0.24 -3.59 7.11 99.48 0.71 -2.88 16 17 C -0.11 -2.70 4.88 30.59 0.15 -2.55 16 18 C -0.14 -3.79 5.52 30.59 0.17 -3.62 16 19 H 0.02 1.41 8.14 -2.38 -0.02 1.39 16 20 H -0.07 -4.65 8.14 -2.39 -0.02 -4.67 16 21 H -0.01 -0.30 7.44 -2.39 -0.02 -0.32 16 22 H 0.07 3.79 8.05 -2.38 -0.02 3.77 16 23 H 0.33 14.25 5.57 -89.69 -0.50 13.75 16 24 H 0.07 2.31 7.80 -2.38 -0.02 2.29 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.56 6.86 -2.39 -0.02 1.54 16 29 H 0.12 1.63 7.85 -2.39 -0.02 1.61 16 30 H 0.34 6.60 8.23 -92.70 -0.76 5.84 16 31 H 0.03 1.09 6.26 -2.39 -0.01 1.07 16 32 H 0.08 1.69 7.95 -2.39 -0.02 1.68 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.25 7.46 -2.39 -0.02 1.23 16 Total: -1.00 -88.54 264.78 2.95 -85.59 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.56 Total: 12.46 kcal Atomic # 6 Polarization: -68.77 SS G_CDS: 2.91 Total: -65.86 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -2.53 Total: -47.35 kcal Atomic # 14 Polarization: 13.16 SS G_CDS: 2.01 Total: 15.17 kcal Total: -88.54 2.95 -85.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256959929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.120 kcal (2) G-P(sol) polarization free energy of solvation -88.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds