Wall clock time and date at job start Sun Mar 29 2020 21:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47050 * 2 1 4 4 C 1.46899 * 110.99652 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46948 * 179.97438 * 4 3 2 6 6 C 1.34945 * 125.48604 * 95.00405 * 5 4 3 7 7 N 1.36669 * 106.72864 * 179.73826 * 6 5 4 8 8 C 1.37569 * 126.88645 * 180.22833 * 7 6 5 9 9 H 1.08000 * 119.99994 * 354.18367 * 8 7 6 10 10 C 1.39003 * 119.99736 * 174.19071 * 8 7 6 11 11 N 1.31252 * 120.00480 * 5.87967 * 10 8 7 12 12 Si 1.86810 * 119.99690 * 185.88796 * 10 8 7 13 13 H 1.48500 * 109.47210 * 94.97552 * 12 10 8 14 14 H 1.48498 * 109.46749 * 214.97691 * 12 10 8 15 15 H 1.48495 * 109.46895 * 334.97523 * 12 10 8 16 16 N 1.40322 * 106.22336 * 0.26041 * 7 6 5 17 17 N 1.28756 * 108.03392 * 0.02562 * 16 7 6 18 18 H 1.08999 * 109.47268 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47461 * 300.00354 * 1 2 3 20 20 H 1.09005 * 109.47040 * 59.99539 * 1 2 3 21 21 H 1.08995 * 109.47033 * 239.99777 * 2 1 3 22 22 H 1.09001 * 109.46780 * 119.99766 * 2 1 3 23 23 H 1.00894 * 111.00398 * 303.95552 * 3 2 1 24 24 H 1.08998 * 109.47063 * 60.00559 * 4 3 2 25 25 H 1.08996 * 109.47469 * 300.00245 * 4 3 2 26 26 H 1.08005 * 126.63630 * 0.02562 * 6 5 4 27 27 H 0.96996 * 119.99917 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9524 2.8579 0.0000 6 6 4.2845 3.5743 1.0943 7 7 4.6526 4.8151 0.6554 8 6 5.0727 5.8732 1.4278 9 1 5.0480 5.7988 2.5049 10 6 5.5290 7.0380 0.8218 11 7 5.4517 7.1735 -0.4814 12 14 6.2526 8.4104 1.8623 13 1 7.7307 8.2736 1.9035 14 1 5.8933 9.7234 1.2689 15 1 5.7090 8.3251 3.2415 16 7 4.5152 4.7938 -0.7409 17 7 4.0974 3.6248 -1.0825 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.6442 1.9013 -0.7813 24 1 3.8654 0.9201 -0.8892 25 1 3.8647 0.9203 0.8908 26 1 4.2676 3.2317 2.1184 27 1 5.7698 7.9865 -0.9042 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262023102.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:45 Heat of formation + Delta-G solvation = 59.317187 kcal Electronic energy + Delta-G solvation = -11892.687507 eV Core-core repulsion = 9686.255522 eV Total energy + Delta-G solvation = -2206.431985 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.02000 -37.43234 -35.95534 -33.33650 -32.50888 -29.81563 -27.70659 -25.34765 -23.30886 -22.81814 -21.49496 -19.35188 -17.46296 -16.82440 -16.23938 -16.05599 -15.31681 -15.21952 -14.93391 -14.02647 -13.69594 -13.51838 -13.19981 -12.95541 -12.64239 -12.43362 -12.06208 -11.97871 -11.76654 -11.49567 -11.17016 -10.64857 -9.45356 -9.20389 -8.69317 -6.62325 1.11296 1.38108 1.58651 1.64742 2.07075 2.12062 2.78797 2.91808 3.53183 4.11502 4.22994 4.35407 4.46200 4.58940 4.66574 4.76849 4.89685 5.01829 5.11398 5.16560 5.28094 5.37666 5.93817 5.97505 6.20727 6.43993 6.61128 7.19656 8.21041 8.32404 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.086743 B = 0.007274 C = 0.007066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.716180 B = 3848.388652 C = 3961.410411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 N -0.696 5.696 4 C 0.168 3.832 5 C -0.067 4.067 6 C -0.111 4.111 7 N -0.166 5.166 8 C -0.345 4.345 9 H 0.146 0.854 10 C -0.002 4.002 11 N -0.811 5.811 12 Si 1.029 2.971 13 H -0.262 1.262 14 H -0.271 1.271 15 H -0.240 1.240 16 N -0.153 5.153 17 N -0.359 5.359 18 H 0.079 0.921 19 H 0.055 0.945 20 H 0.047 0.953 21 H 0.031 0.969 22 H 0.081 0.919 23 H 0.335 0.665 24 H 0.032 0.968 25 H 0.097 0.903 26 H 0.190 0.810 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.318 -7.048 5.864 9.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 N -0.328 5.328 4 C 0.037 3.963 5 C -0.216 4.216 6 C -0.265 4.265 7 N 0.062 4.938 8 C -0.481 4.481 9 H 0.163 0.837 10 C -0.217 4.217 11 N -0.438 5.438 12 Si 0.846 3.154 13 H -0.187 1.187 14 H -0.196 1.196 15 H -0.163 1.163 16 N -0.129 5.129 17 N -0.219 5.219 18 H 0.098 0.902 19 H 0.074 0.926 20 H 0.066 0.934 21 H 0.049 0.951 22 H 0.099 0.901 23 H 0.152 0.848 24 H 0.050 0.950 25 H 0.115 0.885 26 H 0.207 0.793 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.218 -6.081 4.921 8.459 hybrid contribution 0.427 -0.014 0.069 0.432 sum -2.792 -6.094 4.990 8.356 Atomic orbital electron populations 1.21738 0.94060 1.02554 1.01891 1.22029 0.96474 0.88300 1.00911 1.60580 1.07456 1.14534 1.50207 1.19878 0.87486 0.87999 1.00893 1.21413 1.12276 0.99229 0.88643 1.23043 1.15294 0.86890 1.01255 1.47054 1.31149 1.08464 1.07162 1.20991 1.42766 0.91985 0.92380 0.83653 1.27121 0.95284 1.01824 0.97430 1.70307 1.34101 1.27733 1.11691 0.84443 0.78410 0.74323 0.78221 1.18682 1.19551 1.16302 1.82463 1.28772 1.12561 0.89076 1.73942 1.18225 1.01271 1.28427 0.90177 0.92551 0.93356 0.95121 0.90097 0.84833 0.95010 0.88499 0.79285 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 10.17 71.98 0.73 -2.26 15 2 C 0.05 1.25 6.40 86.30 0.55 1.80 15 3 N -0.70 -22.88 6.49 -517.93 -3.36 -26.24 15 4 C 0.17 6.05 6.21 85.56 0.53 6.58 15 5 C -0.07 -3.22 6.61 41.56 0.27 -2.95 15 6 C -0.11 -5.39 11.47 83.18 0.95 -4.43 15 7 N -0.17 -9.42 3.78 -190.21 -0.72 -10.14 15 8 C -0.35 -18.12 10.30 83.98 0.86 -17.25 15 9 H 0.15 6.58 7.84 -2.91 -0.02 6.55 15 10 C 0.00 -0.10 5.50 84.96 0.47 0.37 15 11 N -0.81 -45.61 11.91 21.66 0.26 -45.35 15 12 Si 1.03 36.78 29.56 68.60 2.03 38.81 15 13 H -0.26 -9.06 7.11 99.48 0.71 -8.35 15 14 H -0.27 -9.47 7.11 99.48 0.71 -8.77 15 15 H -0.24 -7.73 7.11 99.48 0.71 -7.02 15 16 N -0.15 -9.48 11.75 37.02 0.44 -9.04 15 17 N -0.36 -20.43 12.33 -48.99 -0.60 -21.03 15 18 H 0.08 1.27 8.14 -2.39 -0.02 1.25 15 19 H 0.06 1.24 8.14 -2.39 -0.02 1.22 15 20 H 0.05 1.03 8.14 -2.38 -0.02 1.01 15 21 H 0.03 0.71 8.14 -2.39 -0.02 0.69 15 22 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.33 11.93 8.72 -89.70 -0.78 11.15 15 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 15 25 H 0.10 2.98 8.14 -2.39 -0.02 2.96 15 26 H 0.19 7.52 8.06 -2.91 -0.02 7.50 15 27 H 0.29 14.58 8.30 -92.71 -0.77 13.81 15 Total: -1.00 -69.07 243.72 2.80 -66.27 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.39 Total: 24.87 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 4.38 Total: -18.14 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -3.99 Total: -111.80 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Total: -69.07 2.80 -66.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262023102.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.586 kcal (2) G-P(sol) polarization free energy of solvation -69.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds