Wall clock time and date at job start Sun Mar 29 2020 21:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47683 * 111.00205 * 2 1 4 4 C 1.53702 * 88.23413 * 222.38811 * 3 2 1 5 5 C 1.46422 * 110.99713 * 264.43069 * 2 1 3 6 6 C 1.52541 * 121.84935 * 265.40595 * 5 2 1 7 7 N 1.47672 * 87.65417 * 99.08116 * 6 5 2 8 8 C 1.46895 * 110.99864 * 137.94115 * 7 6 5 9 9 C 1.50702 * 109.46770 * 170.00169 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72214 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.47676 * 88.10176 * 26.14351 * 7 6 5 18 18 H 1.08997 * 109.47578 * 155.56583 * 1 2 3 19 19 H 1.09004 * 109.47346 * 275.57390 * 1 2 3 20 20 H 1.09006 * 109.46944 * 35.56338 * 1 2 3 21 21 H 1.09003 * 113.43200 * 337.23113 * 3 2 1 22 22 H 1.09000 * 113.43037 * 107.49169 * 3 2 1 23 23 H 1.08999 * 114.22270 * 271.54700 * 4 3 2 24 24 H 1.09000 * 114.22713 * 138.65691 * 4 3 2 25 25 H 1.09000 * 113.52851 * 344.38465 * 6 5 2 26 26 H 1.09001 * 113.58338 * 213.78893 * 6 5 2 27 27 H 1.09004 * 109.47258 * 50.00493 * 8 7 6 28 28 H 1.08994 * 109.47601 * 290.00085 * 8 7 6 29 29 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 30 30 H 1.09000 * 113.51799 * 88.55081 * 17 7 6 31 31 H 1.09003 * 113.51984 * 219.15998 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9983 1.3787 0.0000 4 6 3.0406 0.9278 -1.0357 5 6 1.9936 -0.1327 -1.3605 6 6 2.3790 -1.4875 -1.9461 7 7 1.0695 -1.4968 -2.6287 8 6 1.1984 -1.9851 -4.0081 9 6 -0.1727 -2.2137 -4.5902 10 1 -1.0519 -2.0156 -3.9951 11 6 -0.3049 -2.6698 -5.8847 12 7 0.7658 -2.9107 -6.6095 13 14 -2.0045 -2.9459 -6.6087 14 1 -3.0355 -2.6031 -5.5964 15 1 -2.1793 -2.0827 -7.8045 16 1 -2.1500 -4.3707 -7.0012 17 6 1.0917 -0.0208 -2.5856 18 1 -0.3634 -0.9356 -0.4251 19 1 -0.3634 0.0998 1.0228 20 1 -0.3633 0.8360 -0.5977 21 1 1.2927 2.1139 -0.3871 22 1 2.4343 1.6756 0.9539 23 1 3.9591 0.5317 -0.6026 24 1 3.2139 1.6455 -1.8375 25 1 2.4842 -2.2715 -1.1963 26 1 3.2261 -1.4417 -2.6306 27 1 1.7553 -2.9221 -4.0113 28 1 1.7288 -1.2452 -4.6075 29 1 0.6728 -3.2319 -7.5201 30 1 1.5823 0.4322 -3.4471 31 1 0.1194 0.4228 -2.3710 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936825.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:33 Heat of formation + Delta-G solvation = 53.204283 kcal Electronic energy + Delta-G solvation = -12696.302811 eV Core-core repulsion = 10593.146094 eV Total energy + Delta-G solvation = -2103.156717 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.37763 -38.26432 -34.93999 -31.64972 -30.64766 -27.09632 -26.85227 -25.08465 -24.02017 -22.03759 -19.12277 -18.52248 -17.15779 -16.90761 -16.72415 -16.23705 -15.22919 -14.86924 -14.76484 -14.20601 -13.79115 -13.49013 -13.02339 -12.84785 -12.49483 -12.47093 -12.33637 -12.17467 -12.10846 -11.54748 -11.38702 -10.97657 -10.65290 -9.76865 -9.60955 -8.25826 -6.36465 1.37068 1.37980 1.51983 2.36713 2.87742 3.06134 3.23794 3.38930 3.76387 4.02995 4.13560 4.35928 4.47437 4.52368 4.59517 4.61234 4.66879 4.80293 4.82355 4.87414 4.98050 5.03879 5.08443 5.22936 5.49134 5.56713 5.75410 6.04437 6.13961 6.44742 6.77862 7.33246 8.85536 Molecular weight = 196.13amu Principal moments of inertia in cm(-1) A = 0.063541 B = 0.008650 C = 0.008068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.555463 B = 3236.379394 C = 3469.611946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.461 5.461 3 C 0.004 3.996 4 C -0.123 4.123 5 C 0.035 3.965 6 C 0.010 3.990 7 N -0.483 5.483 8 C 0.175 3.825 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.001 3.999 12 N -0.933 5.933 13 Si 0.971 3.029 14 H -0.266 1.266 15 H -0.274 1.274 16 H -0.276 1.276 17 C 0.010 3.990 18 H 0.054 0.946 19 H 0.083 0.917 20 H 0.041 0.959 21 H 0.076 0.924 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.068 0.932 27 H -0.002 1.002 28 H -0.018 1.018 29 H 0.266 0.734 30 H 0.064 0.936 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 9.209 10.640 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 N -0.182 5.182 3 C -0.124 4.124 4 C -0.161 4.161 5 C -0.057 4.057 6 C -0.120 4.120 7 N -0.205 5.205 8 C 0.048 3.952 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.796 3.204 14 H -0.190 1.190 15 H -0.200 1.200 16 H -0.201 1.201 17 C -0.121 4.121 18 H 0.073 0.927 19 H 0.101 0.899 20 H 0.059 0.941 21 H 0.095 0.905 22 H 0.123 0.877 23 H 0.125 0.875 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.016 0.984 28 H 0.000 1.000 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.961 8.254 11.275 14.110 hybrid contribution -0.438 0.296 -1.888 1.961 sum 1.523 8.550 9.386 12.788 Atomic orbital electron populations 1.22784 0.89114 1.01444 1.02173 1.68595 1.10086 1.20438 1.19108 1.23861 0.97204 0.90335 1.00992 1.23046 0.97239 0.96524 0.99324 1.23207 0.96874 0.95836 0.89809 1.23646 0.92797 0.97925 0.97643 1.68913 1.25951 1.09750 1.15933 1.19927 0.96285 0.93680 0.85346 1.21431 0.93080 1.44010 0.97928 0.92602 1.25947 1.01396 0.95001 0.97347 1.70082 1.30618 1.46606 1.10050 0.85305 0.78933 0.78027 0.78178 1.19043 1.19958 1.20150 1.23860 0.99983 0.91511 0.96755 0.92666 0.89858 0.94076 0.90541 0.87677 0.87496 0.89235 0.90421 0.91425 0.98350 1.00017 0.92522 0.91758 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 8.81 127.69 1.12 0.94 16 2 N -0.46 -13.23 6.76 -924.98 -6.25 -19.48 16 3 C 0.00 0.09 7.71 82.35 0.64 0.72 16 4 C -0.12 -2.81 8.26 30.67 0.25 -2.56 16 5 C 0.03 1.10 1.41 -0.56 0.00 1.10 16 6 C 0.01 0.36 7.59 83.90 0.64 1.00 16 7 N -0.48 -22.19 6.05 -932.04 -5.64 -27.83 16 8 C 0.17 9.68 4.57 85.56 0.39 10.07 16 9 C -0.53 -31.22 9.39 25.60 0.24 -30.98 16 10 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 11 C 0.00 0.07 5.46 84.66 0.46 0.53 16 12 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 13 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 17 C 0.01 0.36 6.81 83.90 0.57 0.93 16 18 H 0.05 1.91 7.83 -2.39 -0.02 1.89 16 19 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 20 H 0.04 1.10 6.24 -2.38 -0.01 1.09 16 21 H 0.08 1.51 7.53 -2.39 -0.02 1.49 16 22 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 26 H 0.07 2.53 7.91 -2.39 -0.02 2.51 16 27 H 0.00 -0.10 8.08 -2.38 -0.02 -0.12 16 28 H -0.02 -1.04 7.31 -2.39 -0.02 -1.06 16 29 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 30 H 0.06 2.51 7.42 -2.39 -0.02 2.50 16 31 H 0.08 2.91 6.25 -2.39 -0.01 2.89 16 Total: -1.00 -66.00 252.35 -4.18 -70.18 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.09 Total: 4.83 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 4.31 Total: -18.25 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -11.61 Total: -104.09 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -66.00 -4.18 -70.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936825.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.384 kcal (2) G-P(sol) polarization free energy of solvation -66.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds