Wall clock time and date at job start Sun Mar 29 2020 21:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48491 * 109.47274 * 270.00663 * 3 2 1 5 5 H 1.48505 * 109.46713 * 30.00740 * 3 2 1 6 6 H 1.48502 * 109.46813 * 150.00160 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 H 1.09000 * 110.73504 * 56.56872 * 12 10 9 14 14 C 1.54979 * 110.83450 * 180.02562 * 12 10 9 15 15 C 1.54282 * 103.75044 * 155.29640 * 14 12 10 16 16 C 1.51449 * 106.84761 * 336.87770 * 15 14 12 17 17 O 1.20761 * 126.33944 * 179.62667 * 16 15 14 18 18 C 1.51837 * 107.32100 * 359.64041 * 16 15 14 19 19 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 20 20 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 21 21 H 1.08999 * 110.57032 * 273.85765 * 14 12 10 22 22 H 1.08991 * 110.57077 * 36.58097 * 14 12 10 23 23 H 1.09000 * 109.98719 * 96.22228 * 15 14 12 24 24 H 1.08995 * 109.98637 * 217.48860 * 15 14 12 25 25 H 1.08996 * 110.44451 * 265.05709 * 18 16 15 26 26 H 1.09001 * 110.44170 * 142.52671 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6525 0.7002 6 1 3.5458 1.4399 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 1 0.5638 -4.9121 -0.8637 14 6 2.2223 -6.0646 -0.0188 15 6 1.3983 -7.2117 0.6020 16 6 0.3074 -6.5689 1.4328 17 8 -0.5425 -7.1459 2.0677 18 6 0.4799 -5.0646 1.3195 19 1 -0.4850 0.8401 0.0004 20 1 0.3532 -2.3907 -0.0005 21 1 2.5173 -6.3132 -1.0382 22 1 3.0995 -5.8469 0.5903 23 1 0.9560 -7.8215 -0.1859 24 1 2.0360 -7.8278 1.2358 25 1 1.0668 -4.6846 2.1557 26 1 -0.4916 -4.5719 1.2799 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326654839.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:24 Heat of formation + Delta-G solvation = -91.998570 kcal Electronic energy + Delta-G solvation = -12198.942784 eV Core-core repulsion = 9855.937842 eV Total energy + Delta-G solvation = -2343.004942 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.72515 -38.16249 -35.42708 -33.93699 -31.31260 -29.03921 -26.94719 -24.85808 -21.60409 -19.23113 -18.93889 -17.90079 -16.51009 -15.88787 -15.07377 -14.61523 -14.32270 -13.89357 -13.68989 -13.30705 -12.67449 -12.34149 -11.74889 -11.43442 -11.23976 -11.08329 -10.88315 -10.49302 -10.42406 -10.23861 -9.56732 -9.43546 -8.42431 -8.02778 -6.46834 -3.88010 2.02959 3.14458 3.24172 3.29703 3.79678 4.11305 4.28972 4.65194 4.85290 5.04526 5.27647 5.28910 5.46954 5.54743 5.70777 5.81779 6.00592 6.07134 6.32467 6.39056 6.56860 7.50512 7.58524 8.00227 8.54308 9.11858 9.48606 9.98973 10.70509 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.064915 B = 0.008421 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.227783 B = 3324.267196 C = 3634.973165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.104 0.896 9 N -0.557 5.557 10 C 0.446 3.554 11 O -0.594 6.594 12 C -0.102 4.102 13 H 0.093 0.907 14 C -0.097 4.097 15 C -0.184 4.184 16 C 0.373 3.627 17 O -0.457 6.457 18 C -0.173 4.173 19 H 0.273 0.727 20 H 0.393 0.607 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 -8.240 -0.023 8.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.122 0.878 9 N -0.192 5.192 10 C 0.232 3.768 11 O -0.479 6.479 12 C -0.124 4.124 13 H 0.111 0.889 14 C -0.135 4.135 15 C -0.222 4.222 16 C 0.249 3.751 17 O -0.331 6.331 18 C -0.211 4.211 19 H 0.082 0.918 20 H 0.227 0.773 21 H 0.094 0.906 22 H 0.106 0.894 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.127 0.873 26 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.139 -8.361 0.317 8.368 hybrid contribution -0.215 0.972 -0.106 1.001 sum -0.076 -7.389 0.211 7.392 Atomic orbital electron populations 1.69613 1.05980 1.28320 1.50053 1.25287 0.95627 0.99815 0.97074 0.85849 0.79254 0.80718 0.78432 1.20355 1.20884 1.19365 1.19738 0.93430 0.82281 1.47874 0.87835 1.41909 1.09282 1.04647 1.63324 1.19588 0.88032 0.84537 0.84691 1.90516 1.13833 1.87127 1.56470 1.22060 0.97785 0.95283 0.97227 0.88881 1.22117 0.97940 0.91486 1.01971 1.22713 0.98338 1.00207 1.00919 1.25074 0.81788 0.92337 0.75897 1.90390 1.34166 1.72404 1.36129 1.22894 1.03003 0.95468 0.99709 0.91750 0.77327 0.90629 0.89372 0.88616 0.88540 0.87306 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 13.05 55.50 0.72 -23.34 15 2 C 0.02 0.63 5.50 -17.46 -0.10 0.54 15 3 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 15 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 15 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 15 9 N -0.56 -13.69 5.29 -10.96 -0.06 -13.74 15 10 C 0.45 10.05 7.09 -10.98 -0.08 9.97 15 11 O -0.59 -15.45 15.29 5.55 0.08 -15.37 15 12 C -0.10 -1.67 3.32 -89.73 -0.30 -1.97 15 13 H 0.09 1.38 8.14 -51.93 -0.42 0.95 15 14 C -0.10 -1.38 5.97 -25.02 -0.15 -1.53 15 15 C -0.18 -2.17 6.69 -26.84 -0.18 -2.35 15 16 C 0.37 5.35 7.88 -28.11 -0.22 5.13 15 17 O -0.46 -7.80 17.99 6.00 0.11 -7.69 15 18 C -0.17 -2.61 6.16 -26.32 -0.16 -2.77 15 19 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 20 H 0.39 9.27 7.90 -40.82 -0.32 8.95 15 21 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.09 1.39 7.41 -51.93 -0.38 1.01 15 23 H 0.10 0.97 8.14 -51.93 -0.42 0.54 15 24 H 0.10 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.11 1.71 8.04 -51.93 -0.42 1.30 15 26 H 0.10 1.42 8.14 -51.93 -0.42 0.99 15 LS Contribution 234.31 15.07 3.53 3.53 Total: -1.00 -30.66 234.31 -4.71 -35.37 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -2.75 Total: 7.01 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.33 Total: -1.40 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.67 Total: -37.09 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.19 Total: -23.06 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.66 -4.71 -35.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326654839.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.629 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds