Wall clock time and date at job start Sun Mar 29 2020 22:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99909 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00395 * 180.02562 * 12 11 10 15 15 C 1.47068 * 136.05487 * 359.63118 * 14 12 11 16 16 C 1.53233 * 88.08341 * 207.20381 * 15 14 12 17 17 C 1.47057 * 136.05723 * 180.02562 * 14 12 11 18 18 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 21 21 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 22 22 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 23 23 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 24 24 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 25 25 H 1.08999 * 113.46385 * 321.93631 * 15 14 12 26 26 H 1.08998 * 113.46452 * 92.37550 * 15 14 12 27 27 H 1.08997 * 114.32545 * 220.46917 * 16 15 14 28 28 H 1.09004 * 114.01523 * 87.71332 * 16 15 14 29 29 H 1.08999 * 113.46677 * 267.62213 * 17 14 12 30 30 H 1.09004 * 113.47444 * 38.06248 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 8 3.6522 -5.9108 0.0008 14 7 2.0106 -7.4032 -0.0015 15 6 0.6954 -8.0615 0.0035 16 6 1.3544 -9.2583 0.6973 17 6 2.6199 -8.7416 -0.0008 18 1 -0.4851 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8904 20 1 0.6248 -2.5571 0.8896 21 1 2.8721 -3.6042 -0.8905 22 1 2.8721 -3.6043 0.8895 23 1 0.8535 -5.0450 0.8885 24 1 0.8542 -5.0446 -0.8914 25 1 -0.0419 -7.5533 0.6249 26 1 0.3209 -8.2903 -0.9942 27 1 1.0113 -10.2292 0.3399 28 1 1.3810 -9.1815 1.7843 29 1 2.7634 -9.1537 -0.9997 30 1 3.5153 -8.8108 0.6169 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326772117.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:13 Heat of formation + Delta-G solvation = -17.590830 kcal Electronic energy + Delta-G solvation = -12058.570441 eV Core-core repulsion = 9854.625155 eV Total energy + Delta-G solvation = -2203.945286 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.16526 -37.71354 -34.14558 -32.02809 -30.02200 -27.56688 -26.04013 -23.85818 -21.95264 -20.04776 -18.77007 -16.83286 -16.35652 -16.19762 -15.25469 -14.83172 -14.38918 -13.30902 -13.04343 -12.74251 -12.67982 -12.20723 -11.80876 -11.64916 -11.30559 -10.91083 -10.78349 -10.56182 -10.50864 -9.64676 -9.63390 -9.23756 -8.99227 -8.66141 -8.29899 -5.95565 -3.96908 2.86617 3.00182 3.36544 3.42113 3.47292 4.17259 4.50811 4.67448 4.84559 5.04891 5.26708 5.30670 5.40481 5.47908 5.53835 5.69900 5.74351 5.90531 5.98879 6.31062 6.75614 6.96326 7.18286 7.72618 7.83378 7.86155 8.05342 8.44343 8.49416 9.10130 9.66944 11.16039 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.088706 B = 0.005973 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.575416 B = 4687.010374 C = 4943.001803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.130 4.130 12 C 0.540 3.460 13 O -0.538 6.538 14 N -0.657 5.657 15 C 0.100 3.900 16 C -0.157 4.157 17 C 0.100 3.900 18 H 0.260 0.740 19 H 0.016 0.984 20 H 0.016 0.984 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -17.633 0.336 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.170 4.170 12 C 0.332 3.668 13 O -0.414 6.414 14 N -0.396 5.396 15 C -0.024 4.024 16 C -0.195 4.195 17 C -0.023 4.023 18 H 0.069 0.931 19 H 0.034 0.966 20 H 0.034 0.966 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.252 -17.127 0.338 17.132 hybrid contribution 0.314 0.887 -0.105 0.947 sum 0.062 -16.240 0.233 16.242 Atomic orbital electron populations 1.69961 1.06046 1.26526 1.51270 1.25017 0.94854 0.99243 0.95386 0.86585 0.79902 0.83391 0.78101 1.20674 1.21255 1.19830 1.21278 0.93208 0.91005 1.50092 0.92563 1.19133 0.93963 0.91436 0.97133 1.21471 0.98681 0.91498 1.01710 1.21784 0.98008 0.93574 1.03619 1.20952 0.89991 0.81589 0.74261 1.90681 1.17463 1.83528 1.49687 1.49878 1.10102 1.04377 1.75199 1.22896 0.87624 0.91145 1.00693 1.23345 0.96825 0.98222 1.01076 1.22864 0.97779 0.81369 1.00329 0.93079 0.96598 0.96581 0.92713 0.92665 0.89501 0.89505 0.90199 0.89848 0.89412 0.88867 0.90213 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -15.29 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.17 4.44 -26.73 -0.12 -2.29 16 11 C -0.13 -2.34 5.53 -27.89 -0.15 -2.50 16 12 C 0.54 9.77 8.08 -10.99 -0.09 9.68 16 13 O -0.54 -11.87 16.76 5.55 0.09 -11.78 16 14 N -0.66 -9.00 3.69 -185.46 -0.68 -9.68 16 15 C 0.10 0.90 8.40 -8.65 -0.07 0.83 16 16 C -0.16 -1.13 8.48 -26.36 -0.22 -1.35 16 17 C 0.10 1.02 8.61 -8.52 -0.07 0.95 16 18 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 19 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 20 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.05 1.29 8.10 -51.93 -0.42 0.86 16 22 H 0.05 1.30 8.10 -51.93 -0.42 0.88 16 23 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 261.34 15.07 3.94 3.94 Total: -1.00 -34.40 261.34 -6.83 -41.23 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -4.61 Total: -5.94 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -1.28 Total: -8.33 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.05 Total: -36.40 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.40 -6.83 -41.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326772117.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.636 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds