Wall clock time and date at job start Sun Mar 29 2020 22:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99909 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00395 * 180.02562 * 12 11 10 15 15 C 1.47068 * 136.05487 * 359.63118 * 14 12 11 16 16 C 1.53233 * 88.08341 * 207.20381 * 15 14 12 17 17 C 1.47057 * 136.05723 * 180.02562 * 14 12 11 18 18 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 21 21 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 22 22 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 23 23 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 24 24 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 25 25 H 1.08999 * 113.46385 * 321.93631 * 15 14 12 26 26 H 1.08998 * 113.46452 * 92.37550 * 15 14 12 27 27 H 1.08997 * 114.32545 * 220.46917 * 16 15 14 28 28 H 1.09004 * 114.01523 * 87.71332 * 16 15 14 29 29 H 1.08999 * 113.46677 * 267.62213 * 17 14 12 30 30 H 1.09004 * 113.47444 * 38.06248 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 8 3.6522 -5.9108 0.0008 14 7 2.0106 -7.4032 -0.0015 15 6 0.6954 -8.0615 0.0035 16 6 1.3544 -9.2583 0.6973 17 6 2.6199 -8.7416 -0.0008 18 1 -0.4851 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8904 20 1 0.6248 -2.5571 0.8896 21 1 2.8721 -3.6042 -0.8905 22 1 2.8721 -3.6043 0.8895 23 1 0.8535 -5.0450 0.8885 24 1 0.8542 -5.0446 -0.8914 25 1 -0.0419 -7.5533 0.6249 26 1 0.3209 -8.2903 -0.9942 27 1 1.0113 -10.2292 0.3399 28 1 1.3810 -9.1815 1.7843 29 1 2.7634 -9.1537 -0.9997 30 1 3.5153 -8.8108 0.6169 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326772117.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:13 Heat of formation + Delta-G solvation = -40.745272 kcal Electronic energy + Delta-G solvation = -12059.574493 eV Core-core repulsion = 9854.625155 eV Total energy + Delta-G solvation = -2204.949338 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.23510 -38.95314 -36.14193 -34.05585 -31.31729 -29.27447 -26.91713 -25.68888 -23.16042 -21.79827 -19.86002 -18.54547 -17.92497 -17.30688 -16.67134 -16.40059 -16.20101 -14.80226 -14.49600 -14.15585 -13.79593 -13.53492 -13.43785 -13.12347 -12.65081 -12.55168 -12.43374 -12.32469 -11.65242 -11.60571 -11.49458 -11.28468 -10.73884 -10.55957 -9.72373 -8.21588 -6.32034 1.38987 1.40426 1.52067 1.57372 1.89126 2.40994 3.11234 3.44422 3.64275 4.10864 4.14270 4.21836 4.30830 4.54194 4.61065 4.65937 4.73482 4.90784 4.96413 5.01476 5.08928 5.15645 5.34365 5.50852 5.71224 5.83515 6.25360 6.70319 6.82642 7.12666 7.36727 8.90152 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.088706 B = 0.005973 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.575416 B = 4687.010374 C = 4943.001803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.027 3.973 10 C -0.082 4.082 11 C -0.120 4.120 12 C 0.535 3.465 13 O -0.593 6.593 14 N -0.664 5.664 15 C 0.093 3.907 16 C -0.132 4.132 17 C 0.087 3.913 18 H 0.265 0.735 19 H 0.002 0.998 20 H 0.002 0.998 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.505 -18.781 0.250 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.010 4.010 10 C -0.120 4.120 11 C -0.160 4.160 12 C 0.327 3.673 13 O -0.475 6.475 14 N -0.400 5.400 15 C -0.029 4.029 16 C -0.169 4.169 17 C -0.034 4.034 18 H 0.074 0.926 19 H 0.020 0.980 20 H 0.020 0.980 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.143 0.857 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.959 -18.339 0.253 18.366 hybrid contribution 0.460 1.144 -0.083 1.236 sum -0.499 -17.195 0.170 17.203 Atomic orbital electron populations 1.70062 1.07524 1.27878 1.51461 1.25912 0.95843 1.03095 0.94538 0.85471 0.78589 0.78539 0.78597 1.19632 1.20128 1.19331 1.21676 0.93328 0.92782 1.50987 0.93115 1.19013 0.94132 0.92305 0.95572 1.21178 0.97696 0.92951 1.00215 1.21579 0.97725 0.91450 1.05244 1.20746 0.88966 0.83210 0.74424 1.90647 1.19312 1.84739 1.52753 1.50005 1.13247 1.04026 1.72681 1.23308 0.85912 0.91085 1.02556 1.23284 0.93752 0.99081 1.00796 1.23243 0.98888 0.79522 1.01798 0.92576 0.98012 0.98002 0.94185 0.94177 0.87836 0.87814 0.89463 0.87524 0.85710 0.88829 0.88343 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.96 45.79 29.54 68.60 2.03 47.81 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.55 -33.14 9.11 25.60 0.23 -32.90 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.08 -3.84 4.44 30.60 0.14 -3.71 16 11 C -0.12 -4.31 5.53 29.85 0.16 -4.15 16 12 C 0.53 19.32 8.08 87.66 0.71 20.03 16 13 O -0.59 -26.98 16.76 -3.04 -0.05 -27.03 16 14 N -0.66 -17.11 3.69 -859.05 -3.17 -20.28 16 15 C 0.09 1.37 8.40 83.09 0.70 2.07 16 16 C -0.13 -1.40 8.48 30.84 0.26 -1.14 16 17 C 0.09 1.60 8.61 83.17 0.72 2.32 16 18 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 19 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 20 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 21 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 22 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 23 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 24 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -75.84 261.34 3.71 -72.13 By element: Atomic # 1 Polarization: -1.81 SS G_CDS: 1.09 Total: -0.71 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.53 Total: -15.15 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -2.89 Total: -77.05 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.05 Total: -27.03 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -75.84 3.71 -72.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326772117.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.382 kcal (2) G-P(sol) polarization free energy of solvation -75.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds