Wall clock time and date at job start Sun Mar 29 2020 21:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47043 * 89.97438 * 6 5 4 8 8 C 1.53000 * 109.46726 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46992 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99669 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00136 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00270 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99895 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.46917 * 90.00310 * 13 11 9 15 15 H 1.48497 * 109.47425 * 209.99853 * 13 11 9 16 16 H 1.48501 * 109.47336 * 330.00579 * 13 11 9 17 17 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 18 18 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 19 19 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 20 20 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 21 21 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 22 22 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 23 23 H 1.08992 * 109.47125 * 299.99572 * 7 6 5 24 24 H 1.08998 * 109.47323 * 60.00339 * 7 6 5 25 25 H 1.09001 * 109.47552 * 299.99531 * 8 7 6 26 26 H 1.09004 * 109.47308 * 60.00225 * 8 7 6 27 27 H 0.96993 * 120.00446 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2404 -1.7473 1.4442 8 6 6.5114 -2.5990 1.4452 9 6 6.9283 -2.8777 2.8664 10 1 6.3447 -2.4868 3.6868 11 6 8.0546 -3.6317 3.1192 12 7 8.4181 -3.8754 4.3594 13 14 9.0635 -4.3084 1.7002 14 1 10.1099 -3.3243 1.3233 15 1 9.7070 -5.5814 2.1131 16 1 8.1757 -4.5572 0.5360 17 8 2.3021 -1.0832 0.0002 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8898 0.5143 20 1 -0.3633 0.8901 0.5136 21 1 4.6248 -2.4057 -0.5124 22 1 5.6151 -0.9265 -0.5120 23 1 5.4333 -0.8056 1.9579 24 1 4.4431 -2.2847 1.9576 25 1 6.3182 -3.5408 0.9316 26 1 7.3090 -2.0621 0.9317 27 1 9.2102 -4.4061 4.5373 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329276089.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:05 Heat of formation + Delta-G solvation = -10.214814 kcal Electronic energy + Delta-G solvation = -11708.486694 eV Core-core repulsion = 9466.746824 eV Total energy + Delta-G solvation = -2241.739870 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.26035 -37.22481 -36.88968 -34.75748 -33.41895 -30.81949 -28.40616 -25.75609 -23.68343 -23.21669 -21.99953 -18.97777 -18.44434 -18.02561 -16.51471 -16.20672 -15.62977 -15.40174 -14.81706 -14.24472 -13.83766 -13.58976 -13.48707 -13.45957 -12.98530 -12.86328 -12.60869 -12.07397 -11.82671 -11.77529 -11.53249 -11.37136 -10.75152 -10.44096 -8.28018 -6.33707 0.13222 1.28705 1.31238 1.40905 1.42840 1.54678 2.39183 2.89287 3.07879 3.44870 3.86942 4.10335 4.19754 4.26074 4.40189 4.58098 4.70028 4.74227 4.85039 4.86982 5.00890 5.06231 5.43231 5.54470 5.65969 6.27717 6.74674 7.24419 7.30987 8.89188 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.078871 B = 0.006468 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.926842 B = 4328.071730 C = 4429.397338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.162 3.838 3 N -0.331 5.331 4 N -0.326 5.326 5 C 0.177 3.823 6 C -0.020 4.020 7 C -0.090 4.090 8 C -0.009 4.009 9 C -0.539 4.539 10 H 0.024 0.976 11 C -0.001 4.001 12 N -0.956 5.956 13 Si 0.957 3.043 14 H -0.267 1.267 15 H -0.287 1.287 16 H -0.234 1.234 17 O -0.232 6.232 18 H 0.123 0.877 19 H 0.112 0.888 20 H 0.118 0.882 21 H 0.122 0.878 22 H 0.124 0.876 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.031 0.969 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.981 3.263 -13.055 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.050 4.050 3 N -0.178 5.178 4 N -0.172 5.172 5 C -0.035 4.035 6 C -0.058 4.058 7 C -0.129 4.129 8 C -0.047 4.047 9 C -0.577 4.577 10 H 0.043 0.957 11 C -0.197 4.197 12 N -0.596 5.596 13 Si 0.779 3.221 14 H -0.192 1.192 15 H -0.213 1.213 16 H -0.157 1.157 17 O -0.112 6.112 18 H 0.141 0.859 19 H 0.130 0.870 20 H 0.137 0.863 21 H 0.140 0.860 22 H 0.142 0.858 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.507 4.445 -12.959 19.239 hybrid contribution 0.373 -1.340 0.344 1.433 sum -13.134 3.105 -12.615 18.474 Atomic orbital electron populations 1.20722 0.76196 1.07229 1.07111 1.29165 0.99629 0.78801 0.97359 1.74274 0.96306 1.27276 1.19912 1.74321 1.13032 1.10498 1.19308 1.28517 0.85967 0.91409 0.97610 1.20490 0.86668 0.98988 0.99660 1.21316 0.98319 0.99665 0.93602 1.19525 0.94044 0.96194 0.94905 1.21506 1.10466 1.32631 0.93057 0.95719 1.26130 0.98712 0.96089 0.98773 1.70085 1.26753 1.41046 1.21753 0.85561 0.79002 0.77711 0.79782 1.19208 1.21348 1.15682 1.84814 1.17639 1.38806 1.69913 0.85879 0.86951 0.86339 0.86007 0.85798 0.93626 0.93072 0.94536 0.95084 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 71.24 0.75 0.12 15 2 C 0.16 4.07 8.48 88.34 0.75 4.82 15 3 N -0.33 -10.80 12.22 -165.50 -2.02 -12.82 15 4 N -0.33 -11.69 12.22 -165.50 -2.02 -13.71 15 5 C 0.18 5.61 7.73 88.34 0.68 6.29 15 6 C -0.02 -0.57 5.84 29.85 0.17 -0.40 15 7 C -0.09 -3.43 5.14 30.59 0.16 -3.27 15 8 C -0.01 -0.41 4.04 29.85 0.12 -0.29 15 9 C -0.54 -31.02 9.66 25.60 0.25 -30.78 15 10 H 0.02 1.59 7.99 -2.91 -0.02 1.56 15 11 C 0.00 -0.05 5.47 84.66 0.46 0.42 15 12 N -0.96 -60.43 13.96 21.45 0.30 -60.13 15 13 Si 0.96 42.99 27.47 68.60 1.88 44.87 15 14 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 15 H -0.29 -12.82 7.11 99.48 0.71 -12.11 15 16 H -0.23 -9.29 6.54 99.48 0.65 -8.64 15 17 O -0.23 -6.65 10.87 -3.71 -0.04 -6.69 15 18 H 0.12 0.81 8.14 -2.39 -0.02 0.79 15 19 H 0.11 0.88 8.14 -2.39 -0.02 0.86 15 20 H 0.12 1.06 8.14 -2.39 -0.02 1.04 15 21 H 0.12 2.83 8.14 -2.38 -0.02 2.82 15 22 H 0.12 3.20 8.14 -2.38 -0.02 3.18 15 23 H 0.04 1.87 8.14 -2.39 -0.02 1.85 15 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.04 1.50 7.20 -2.39 -0.02 1.49 15 26 H 0.03 1.29 7.57 -2.38 -0.02 1.28 15 27 H 0.27 15.65 8.31 -92.71 -0.77 14.87 15 Total: -1.00 -74.00 242.43 2.54 -71.46 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: 1.10 Total: 0.11 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 3.34 Total: -23.08 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -3.75 Total: -86.67 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.04 Total: -6.69 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.87 kcal Total: -74.00 2.54 -71.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329276089.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.245 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds