Wall clock time and date at job start Sun Mar 29 2020 21:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47196 * 2 1 4 4 O 1.42903 * 109.47173 * 239.99689 * 2 1 3 5 5 C 1.50707 * 109.46990 * 119.99551 * 2 1 3 6 6 C 1.34952 * 125.48330 * 120.28658 * 5 2 1 7 7 N 1.36661 * 106.72361 * 180.15993 * 6 5 2 8 8 C 1.37571 * 126.88369 * 179.84614 * 7 6 5 9 9 H 1.08002 * 120.00318 * 359.71697 * 8 7 6 10 10 C 1.39014 * 119.99843 * 179.43498 * 8 7 6 11 11 N 1.31254 * 120.00065 * 0.27738 * 10 8 7 12 12 Si 1.86803 * 119.99906 * 180.27880 * 10 8 7 13 13 H 1.48504 * 109.47034 * 59.99904 * 12 10 8 14 14 H 1.48504 * 109.47036 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46993 * 299.99976 * 12 10 8 16 16 N 1.40325 * 106.23023 * 359.58856 * 7 6 5 17 17 N 1.28754 * 108.03107 * 0.25843 * 16 7 6 18 18 H 1.08996 * 109.47141 * 300.00518 * 1 2 3 19 19 H 1.08999 * 109.46363 * 60.00285 * 1 2 3 20 20 H 1.08996 * 109.46624 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46948 * 179.97438 * 3 2 1 22 22 H 1.08999 * 109.46778 * 299.99465 * 3 2 1 23 23 H 1.08998 * 109.46789 * 59.99886 * 3 2 1 24 24 H 0.96701 * 113.99783 * 299.99977 * 4 2 1 25 25 H 1.07997 * 126.63660 * 0.02675 * 6 5 2 26 26 H 0.97005 * 119.99937 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0324 -0.7103 1.2306 6 6 2.8160 -1.8090 1.2358 7 7 3.0353 -2.1293 2.5462 8 6 3.7795 -3.1825 3.0253 9 1 4.2599 -3.8618 2.3367 10 6 3.9181 -3.3689 4.3959 11 7 3.3344 -2.5433 5.2328 12 14 4.9351 -4.7944 5.0465 13 1 6.3320 -4.6693 4.5584 14 1 4.9252 -4.7725 6.5313 15 1 4.3560 -6.0750 4.5670 16 7 2.3543 -1.1652 3.3049 17 7 1.7787 -0.3508 2.4905 18 1 -0.3633 0.5139 0.8899 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3632 -1.0277 -0.0005 21 1 3.1301 1.4425 0.0005 22 1 1.6768 1.9563 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.7211 -1.5953 -1.2328 25 1 3.1945 -2.3348 0.3718 26 1 3.4309 -2.6736 6.1893 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331215564.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:08 Heat of formation + Delta-G solvation = 29.819158 kcal Electronic energy + Delta-G solvation = -12479.740900 eV Core-core repulsion = 10174.311122 eV Total energy + Delta-G solvation = -2305.429778 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.22172 -37.15409 -34.09057 -31.95268 -31.04292 -28.28883 -26.78318 -25.60007 -21.66441 -21.15731 -19.41553 -17.85675 -16.04508 -15.52580 -14.57505 -14.25974 -13.81090 -13.65952 -12.96232 -12.23444 -11.98769 -11.72267 -11.68345 -11.52071 -11.37299 -11.18721 -10.78212 -10.55662 -10.13431 -9.83233 -9.29424 -9.18129 -8.70487 -7.41318 -6.83124 -4.63759 2.82753 2.94429 2.99397 3.32318 3.68100 4.06817 4.61886 4.77500 4.80816 5.45940 5.61823 5.69339 6.09669 6.22325 6.31914 6.34489 6.42164 6.57756 6.70462 6.80198 6.95798 7.09512 7.74239 7.89173 8.15315 8.49938 9.11002 10.13652 10.19370 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.074845 B = 0.009422 C = 0.008866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.016811 B = 2970.969416 C = 3157.340275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.224 3.776 3 C -0.125 4.125 4 O -0.562 6.562 5 C -0.100 4.100 6 C -0.111 4.111 7 N -0.148 5.148 8 C -0.316 4.316 9 H 0.120 0.880 10 C 0.047 3.953 11 N -0.761 5.761 12 Si 0.943 3.057 13 H -0.264 1.264 14 H -0.274 1.274 15 H -0.264 1.264 16 N -0.093 5.093 17 N -0.320 5.320 18 H 0.069 0.931 19 H 0.054 0.946 20 H 0.052 0.948 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.372 0.628 25 H 0.156 0.844 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 -0.884 -6.157 6.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.181 3.819 3 C -0.183 4.183 4 O -0.367 6.367 5 C -0.248 4.248 6 C -0.265 4.265 7 N 0.081 4.919 8 C -0.452 4.452 9 H 0.138 0.862 10 C -0.173 4.173 11 N -0.387 5.387 12 Si 0.766 3.234 13 H -0.188 1.188 14 H -0.198 1.198 15 H -0.188 1.188 16 N -0.070 5.070 17 N -0.181 5.181 18 H 0.088 0.912 19 H 0.073 0.927 20 H 0.071 0.929 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.219 0.781 25 H 0.173 0.827 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.869 0.331 -4.551 4.645 hybrid contribution 0.603 -1.779 -0.499 1.943 sum -0.266 -1.448 -5.050 5.260 Atomic orbital electron populations 1.22379 0.95962 1.01933 1.01952 1.18983 0.91391 0.91132 0.80369 1.21654 1.01626 0.93529 1.01479 1.86460 1.77916 1.28773 1.43532 1.21282 1.08995 1.00424 0.94062 1.22214 1.11853 1.04033 0.88354 1.46690 1.25181 1.16393 1.03625 1.20110 1.28255 1.04190 0.92673 0.86230 1.25786 0.96863 0.98837 0.95780 1.70136 1.32541 1.31962 1.04090 0.85754 0.79747 0.79624 0.78317 1.18810 1.19824 1.18822 1.82534 1.13718 0.98262 1.12487 1.73939 1.20869 1.23188 1.00105 0.91177 0.92716 0.92907 0.92461 0.92841 0.90895 0.78067 0.82678 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 8.80 37.16 0.33 -2.41 15 2 C 0.22 4.23 1.37 -91.76 -0.13 4.10 15 3 C -0.13 -2.21 8.83 37.16 0.33 -1.88 15 4 O -0.56 -9.68 12.40 -35.23 -0.44 -10.12 15 5 C -0.10 -2.36 5.58 -83.05 -0.46 -2.82 15 6 C -0.11 -2.67 10.71 -16.57 -0.18 -2.85 15 7 N -0.15 -4.08 3.78 -11.47 -0.04 -4.13 15 8 C -0.32 -8.21 10.31 -14.69 -0.15 -8.36 15 9 H 0.12 2.75 7.83 -52.49 -0.41 2.34 15 10 C 0.05 1.18 5.50 -17.51 -0.10 1.08 15 11 N -0.76 -20.71 11.89 55.50 0.66 -20.05 15 12 Si 0.94 18.16 29.55 -169.99 -5.02 13.14 15 13 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 14 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 15 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 16 N -0.09 -2.76 11.73 60.35 0.71 -2.05 15 17 N -0.32 -8.69 12.33 33.17 0.41 -8.29 15 18 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 19 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.37 5.23 8.59 45.56 0.39 5.62 15 25 H 0.16 3.18 7.67 -52.49 -0.40 2.78 15 26 H 0.28 6.97 8.31 -40.82 -0.34 6.63 15 LS Contribution 235.33 15.07 3.55 3.55 Total: -1.00 -31.45 235.33 -2.63 -34.08 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -2.09 Total: 7.00 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.36 Total: -13.14 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 1.73 Total: -34.51 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.44 Total: -10.12 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.45 -2.63 -34.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331215564.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.900 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds