Wall clock time and date at job start Sun Mar 29 2020 21:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47196 * 2 1 4 4 O 1.42903 * 109.47173 * 239.99689 * 2 1 3 5 5 C 1.50707 * 109.46990 * 119.99551 * 2 1 3 6 6 C 1.34952 * 125.48330 * 120.28658 * 5 2 1 7 7 N 1.36661 * 106.72361 * 180.15993 * 6 5 2 8 8 C 1.37571 * 126.88369 * 179.84614 * 7 6 5 9 9 H 1.08002 * 120.00318 * 359.71697 * 8 7 6 10 10 C 1.39014 * 119.99843 * 179.43498 * 8 7 6 11 11 N 1.31254 * 120.00065 * 0.27738 * 10 8 7 12 12 Si 1.86803 * 119.99906 * 180.27880 * 10 8 7 13 13 H 1.48504 * 109.47034 * 59.99904 * 12 10 8 14 14 H 1.48504 * 109.47036 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46993 * 299.99976 * 12 10 8 16 16 N 1.40325 * 106.23023 * 359.58856 * 7 6 5 17 17 N 1.28754 * 108.03107 * 0.25843 * 16 7 6 18 18 H 1.08996 * 109.47141 * 300.00518 * 1 2 3 19 19 H 1.08999 * 109.46363 * 60.00285 * 1 2 3 20 20 H 1.08996 * 109.46624 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46948 * 179.97438 * 3 2 1 22 22 H 1.08999 * 109.46778 * 299.99465 * 3 2 1 23 23 H 1.08998 * 109.46789 * 59.99886 * 3 2 1 24 24 H 0.96701 * 113.99783 * 299.99977 * 4 2 1 25 25 H 1.07997 * 126.63660 * 0.02675 * 6 5 2 26 26 H 0.97005 * 119.99937 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0324 -0.7103 1.2306 6 6 2.8160 -1.8090 1.2358 7 7 3.0353 -2.1293 2.5462 8 6 3.7795 -3.1825 3.0253 9 1 4.2599 -3.8618 2.3367 10 6 3.9181 -3.3689 4.3959 11 7 3.3344 -2.5433 5.2328 12 14 4.9351 -4.7944 5.0465 13 1 6.3320 -4.6693 4.5584 14 1 4.9252 -4.7725 6.5313 15 1 4.3560 -6.0750 4.5670 16 7 2.3543 -1.1652 3.3049 17 7 1.7787 -0.3508 2.4905 18 1 -0.3633 0.5139 0.8899 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3632 -1.0277 -0.0005 21 1 3.1301 1.4425 0.0005 22 1 1.6768 1.9563 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.7211 -1.5953 -1.2328 25 1 3.1945 -2.3348 0.3718 26 1 3.4309 -2.6736 6.1893 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331215564.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:08 Heat of formation + Delta-G solvation = 5.458724 kcal Electronic energy + Delta-G solvation = -12480.797248 eV Core-core repulsion = 10174.311122 eV Total energy + Delta-G solvation = -2306.486126 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.14620 -38.64296 -35.99398 -33.62275 -32.81319 -30.15090 -28.14603 -27.55400 -23.48877 -22.99435 -21.19572 -19.60724 -17.70680 -17.37006 -16.16157 -15.91078 -15.45890 -15.35752 -14.76000 -13.75691 -13.60573 -13.42052 -13.10209 -13.07914 -12.90084 -12.61110 -12.32892 -12.12035 -11.83415 -11.51890 -11.23223 -10.85895 -10.65553 -9.35069 -8.71051 -6.64857 1.09460 1.36765 1.55500 1.64119 2.05953 2.15954 2.74856 2.90733 3.40450 3.87692 4.13313 4.26687 4.50352 4.76546 4.79071 4.82322 4.93293 5.03569 5.08997 5.19064 5.32802 5.43866 5.92047 5.95115 6.57813 6.88843 7.16374 8.19421 8.29991 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.074845 B = 0.009422 C = 0.008866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.016811 B = 2970.969416 C = 3157.340275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.224 3.776 3 C -0.124 4.124 4 O -0.560 6.560 5 C -0.092 4.092 6 C -0.123 4.123 7 N -0.164 5.164 8 C -0.345 4.345 9 H 0.146 0.854 10 C -0.001 4.001 11 N -0.810 5.810 12 Si 1.029 2.971 13 H -0.251 1.251 14 H -0.272 1.272 15 H -0.249 1.249 16 N -0.153 5.153 17 N -0.347 5.347 18 H 0.054 0.946 19 H 0.086 0.914 20 H 0.053 0.947 21 H 0.043 0.957 22 H 0.085 0.915 23 H 0.063 0.937 24 H 0.387 0.613 25 H 0.190 0.810 26 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -2.030 -7.599 7.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.181 3.819 3 C -0.182 4.182 4 O -0.366 6.366 5 C -0.241 4.241 6 C -0.276 4.276 7 N 0.064 4.936 8 C -0.481 4.481 9 H 0.163 0.837 10 C -0.216 4.216 11 N -0.438 5.438 12 Si 0.846 3.154 13 H -0.175 1.175 14 H -0.197 1.197 15 H -0.173 1.173 16 N -0.130 5.130 17 N -0.206 5.206 18 H 0.074 0.926 19 H 0.105 0.895 20 H 0.072 0.928 21 H 0.062 0.938 22 H 0.104 0.896 23 H 0.082 0.918 24 H 0.236 0.764 25 H 0.207 0.793 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.339 -0.796 -6.015 6.077 hybrid contribution 0.419 -1.409 -0.158 1.478 sum 0.081 -2.204 -6.174 6.556 Atomic orbital electron populations 1.22301 0.94076 1.02347 1.02799 1.19099 0.92737 0.91234 0.78854 1.21640 1.00794 0.93092 1.02636 1.86444 1.78036 1.30031 1.42104 1.22176 1.07342 0.99940 0.94638 1.22941 1.11781 1.04486 0.88377 1.47044 1.25257 1.16553 1.04701 1.20968 1.28541 1.04475 0.94133 0.83656 1.27116 0.97411 1.01602 0.95487 1.70296 1.34318 1.34421 1.04722 0.84515 0.78000 0.75560 0.77351 1.17473 1.19667 1.17269 1.82489 1.16276 1.00116 1.14081 1.73887 1.21651 1.23550 1.01529 0.92643 0.89500 0.92782 0.93755 0.89605 0.91837 0.76356 0.79288 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 8.80 71.98 0.63 -4.26 15 2 C 0.22 8.03 1.37 -11.53 -0.02 8.01 15 3 C -0.12 -4.17 8.83 71.98 0.64 -3.54 15 4 O -0.56 -17.59 12.40 -148.98 -1.85 -19.43 15 5 C -0.09 -4.31 5.58 41.56 0.23 -4.08 15 6 C -0.12 -5.84 10.71 83.18 0.89 -4.95 15 7 N -0.16 -9.13 3.78 -190.21 -0.72 -9.85 15 8 C -0.35 -17.87 10.31 83.98 0.87 -17.00 15 9 H 0.15 6.45 7.83 -2.91 -0.02 6.43 15 10 C 0.00 -0.07 5.50 84.97 0.47 0.40 15 11 N -0.81 -45.12 11.89 21.66 0.26 -44.86 15 12 Si 1.03 36.27 29.55 68.60 2.03 38.30 15 13 H -0.25 -8.29 7.11 99.48 0.71 -7.58 15 14 H -0.27 -9.41 7.11 99.48 0.71 -8.71 15 15 H -0.25 -8.14 7.11 99.48 0.71 -7.44 15 16 N -0.15 -9.39 11.73 37.02 0.43 -8.95 15 17 N -0.35 -19.27 12.33 -48.98 -0.60 -19.88 15 18 H 0.05 1.89 8.14 -2.39 -0.02 1.87 15 19 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 23 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.39 9.62 8.59 -74.06 -0.64 8.99 15 25 H 0.19 7.35 7.67 -2.91 -0.02 7.33 15 26 H 0.29 14.52 8.31 -92.70 -0.77 13.75 15 Total: -1.00 -69.45 235.33 3.81 -65.64 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.55 Total: 24.45 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 3.71 Total: -25.42 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -0.63 Total: -83.54 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -1.85 Total: -19.43 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -69.45 3.81 -65.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331215564.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.100 kcal (2) G-P(sol) polarization free energy of solvation -69.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds