Wall clock time and date at job start Sun Mar 29 2020 22:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00112 * 2 1 4 4 C 1.50697 * 109.46693 * 66.04530 * 3 2 1 5 5 H 1.07996 * 120.00501 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99810 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00233 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99785 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46903 * 90.00477 * 8 6 4 10 10 H 1.48508 * 109.47206 * 209.99851 * 8 6 4 11 11 H 1.48491 * 109.47323 * 330.00234 * 8 6 4 12 12 C 1.46898 * 111.00031 * 236.04574 * 2 1 3 13 13 C 1.50704 * 109.47550 * 293.95618 * 12 2 1 14 14 C 1.40897 * 125.30347 * 94.71291 * 13 12 2 15 15 N 1.29950 * 109.38957 * 180.26482 * 14 13 12 16 16 O 1.41880 * 107.41557 * 0.02562 * 15 14 13 17 17 N 1.29954 * 125.30131 * 275.02904 * 13 12 2 18 18 H 1.09006 * 109.46886 * 183.94895 * 1 2 3 19 19 H 1.08990 * 109.47118 * 303.95217 * 1 2 3 20 20 H 1.09004 * 109.47243 * 63.95350 * 1 2 3 21 21 H 1.08993 * 109.47398 * 186.04510 * 3 2 1 22 22 H 1.09000 * 109.47270 * 306.04704 * 3 2 1 23 23 H 0.97001 * 120.00036 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.47165 * 173.95358 * 12 2 1 25 25 H 1.09006 * 109.47120 * 53.95668 * 12 2 1 26 26 H 1.07994 * 125.30282 * 0.25224 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2984 5 1 1.0739 1.5114 2.0484 6 6 2.0268 3.3494 1.5285 7 7 1.7143 3.9389 2.6619 8 14 3.0000 4.2761 0.2310 9 1 2.0633 4.9797 -0.6816 10 1 3.8863 5.2679 0.8914 11 1 3.8239 3.3175 -0.5483 12 6 1.9955 -0.7660 -1.1376 13 6 1.6369 -2.2205 -0.9729 14 6 0.5094 -2.8500 -1.5365 15 7 0.4984 -4.1033 -1.1931 16 8 1.6390 -4.3310 -0.3806 17 7 2.3165 -3.0881 -0.2843 18 1 -0.3633 -1.0253 0.0708 19 1 -0.3633 0.5739 0.8524 20 1 -0.3634 0.4513 -0.9233 21 1 3.0797 1.3444 -0.1082 22 1 1.5612 1.9274 -0.8309 23 1 1.9889 4.8550 2.8239 24 1 3.0797 -0.6611 -1.1756 25 1 1.5611 -0.3872 -2.0628 26 1 -0.2305 -2.3663 -2.1568 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333586230.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:03 Heat of formation + Delta-G solvation = 102.945151 kcal Electronic energy + Delta-G solvation = -12135.010610 eV Core-core repulsion = 9832.751813 eV Total energy + Delta-G solvation = -2302.258797 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.31831 -37.10150 -33.50780 -32.67827 -32.25665 -28.50556 -27.34620 -24.64270 -23.03297 -21.10888 -20.24570 -17.25916 -16.83215 -15.96785 -15.10762 -14.89885 -14.63380 -14.22870 -13.84252 -12.92855 -12.40195 -12.37619 -11.73053 -11.70107 -11.50765 -11.28824 -11.06166 -10.85439 -10.63890 -10.39065 -9.93804 -9.42473 -8.66768 -7.70453 -6.13330 -4.12404 0.60706 2.04732 2.76819 3.21487 3.25149 3.29962 3.30591 4.00655 4.33598 4.64382 4.87980 5.10634 5.18800 5.35315 5.57219 5.70994 5.80147 5.98640 6.46780 6.64918 6.78501 6.99788 7.39668 7.62219 7.77886 8.51794 8.94492 9.46438 10.99559 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.071930 B = 0.007886 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.173584 B = 3549.774922 C = 3631.506789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.525 5.525 3 C 0.164 3.836 4 C -0.514 4.514 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.110 3.890 13 C 0.086 3.914 14 C 0.056 3.944 15 N -0.283 5.283 16 O 0.014 5.986 17 N -0.254 5.254 18 H 0.043 0.957 19 H 0.088 0.912 20 H 0.021 0.979 21 H 0.033 0.967 22 H -0.009 1.009 23 H 0.265 0.735 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -7.904 -10.789 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.250 5.250 3 C 0.038 3.962 4 C -0.553 4.553 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.191 1.191 12 C -0.020 4.020 13 C -0.097 4.097 14 C -0.147 4.147 15 N -0.026 5.026 16 O -0.126 6.126 17 N 0.001 4.999 18 H 0.062 0.938 19 H 0.106 0.894 20 H 0.039 0.961 21 H 0.051 0.949 22 H 0.008 0.992 23 H 0.075 0.925 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.217 -9.228 -9.634 13.396 hybrid contribution -0.070 1.721 -1.647 2.383 sum -1.287 -7.507 -11.280 13.611 Atomic orbital electron populations 1.22373 0.87687 0.99930 1.01825 1.61983 1.07927 1.17159 1.37903 1.20248 0.95511 0.82773 0.97644 1.20965 1.36147 0.97279 1.00862 0.90033 1.24891 0.95631 0.97297 0.95371 1.69885 1.46500 1.13318 1.23827 0.86857 0.80620 0.80137 0.82077 1.20260 1.21047 1.19120 1.20775 1.02499 0.83878 0.94811 1.24776 0.92000 0.99490 0.93448 1.26075 0.98458 0.91139 0.99053 1.79834 1.02589 1.15631 1.04556 1.93384 1.30514 1.26992 1.61735 1.80035 1.15325 0.91050 1.13441 0.93786 0.89355 0.96078 0.94901 0.99176 0.92499 0.88241 0.91976 0.77416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.13 60.07 0.55 1.06 15 2 N -0.52 -10.03 4.74 -245.82 -1.17 -11.20 15 3 C 0.16 3.66 3.79 -4.98 -0.02 3.64 15 4 C -0.51 -13.97 9.01 -34.44 -0.31 -14.28 15 5 H 0.08 2.44 7.37 -52.49 -0.39 2.05 15 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 15 7 N -0.90 -26.73 13.96 55.43 0.77 -25.95 15 8 Si 0.88 20.44 27.47 -169.99 -4.67 15.77 15 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 15 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 11 H -0.27 -5.90 6.54 56.52 0.37 -5.53 15 12 C 0.11 1.61 5.51 -4.97 -0.03 1.58 15 13 C 0.09 1.24 5.91 -82.38 -0.49 0.75 15 14 C 0.06 0.65 10.87 -17.34 -0.19 0.46 15 15 N -0.28 -4.02 12.98 30.69 0.40 -3.62 15 16 O 0.01 0.24 13.71 12.02 0.16 0.40 15 17 N -0.25 -4.27 12.98 33.74 0.44 -3.84 15 18 H 0.04 0.65 6.52 -51.93 -0.34 0.31 15 19 H 0.09 1.74 6.76 -51.93 -0.35 1.38 15 20 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 15 21 H 0.03 0.74 6.99 -51.93 -0.36 0.38 15 22 H -0.01 -0.20 7.55 -51.93 -0.39 -0.59 15 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 24 H 0.10 1.44 7.93 -51.93 -0.41 1.03 15 25 H 0.06 0.72 8.12 -51.93 -0.42 0.30 15 26 H 0.21 1.47 8.06 -52.49 -0.42 1.04 15 LS Contribution 232.05 15.07 3.50 3.50 Total: -1.00 -30.90 232.05 -3.82 -34.72 By element: Atomic # 1 Polarization: -2.19 SS G_CDS: -2.68 Total: -4.87 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.58 Total: -4.92 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.44 Total: -44.61 kcal Atomic # 8 Polarization: 0.24 SS G_CDS: 0.16 Total: 0.40 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.90 -3.82 -34.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333586230.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.669 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds