Wall clock time and date at job start Sun Mar 29 2020 22:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47184 * 2 1 4 4 N 1.40587 * 127.38528 * 270.23598 * 3 2 1 5 5 N 1.28901 * 106.83735 * 180.02562 * 4 3 2 6 6 N 1.28420 * 110.35394 * 0.02562 * 5 4 3 7 7 C 1.31562 * 110.50035 * 359.97438 * 6 5 4 8 8 N 1.38217 * 126.46331 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00694 * 176.16215 * 8 7 6 10 10 C 1.36932 * 119.99580 * 356.16331 * 8 7 6 11 11 H 1.07997 * 120.00533 * 10.68848 * 10 8 7 12 12 C 1.38807 * 120.00050 * 190.69507 * 10 8 7 13 13 N 1.31565 * 119.99835 * 25.15027 * 12 10 8 14 14 Si 1.86807 * 119.99940 * 205.15695 * 12 10 8 15 15 H 1.48497 * 109.46950 * 94.99531 * 14 12 10 16 16 H 1.48503 * 109.46786 * 214.99260 * 14 12 10 17 17 H 1.48499 * 109.46677 * 334.99242 * 14 12 10 18 18 H 1.09005 * 109.46867 * 300.00242 * 1 2 3 19 19 H 1.09005 * 109.46760 * 59.99881 * 1 2 3 20 20 H 1.08996 * 109.47367 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47139 * 239.99420 * 2 1 3 22 22 H 1.09002 * 109.46947 * 119.99627 * 2 1 3 23 23 H 1.08998 * 109.47012 * 84.12483 * 9 8 7 24 24 H 1.08999 * 109.47581 * 204.12543 * 9 8 7 25 25 H 1.08998 * 109.46808 * 324.12760 * 9 8 7 26 26 H 0.97005 * 119.99938 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2985 2.1875 -1.1171 5 7 2.7032 3.3247 -0.6646 6 7 2.7075 3.3185 0.6196 7 6 2.2976 2.1548 1.0761 8 7 2.1747 1.7903 2.4037 9 6 1.6222 0.4799 2.7555 10 6 2.5693 2.6541 3.3901 11 1 2.8129 3.6776 3.1461 12 6 2.6566 2.2143 4.7038 13 7 2.8536 0.9387 4.9587 14 14 2.4942 3.4336 6.1097 15 1 1.0872 3.4574 6.5842 16 1 3.3858 3.0249 7.2248 17 1 2.8805 4.7876 5.6377 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 2.4125 -0.2698 2.7172 24 1 1.2071 0.5190 3.7627 25 1 0.8359 0.2154 2.0485 26 1 2.9142 0.6313 5.8767 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333673951.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:15 Heat of formation + Delta-G solvation = 142.691949 kcal Electronic energy + Delta-G solvation = -12780.116263 eV Core-core repulsion = 10511.873768 eV Total energy + Delta-G solvation = -2268.242495 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42241 -36.91310 -34.75740 -32.17589 -30.16346 -29.74193 -26.81911 -24.71176 -23.36876 -21.39113 -20.54429 -17.49086 -16.55239 -15.71367 -15.31403 -14.51047 -14.33041 -13.74274 -13.22126 -12.85212 -12.31154 -11.99446 -11.67280 -11.45525 -11.20836 -10.93435 -10.65117 -10.50686 -10.38101 -10.16517 -9.41360 -9.30704 -8.87726 -7.52693 -6.64678 -3.94423 2.37122 2.88446 3.08998 3.16099 3.23829 3.77802 3.93627 4.43108 4.79526 4.95758 5.26185 5.42961 5.72632 5.74214 5.84232 6.19469 6.29200 6.42941 6.60696 6.77030 6.89008 7.18107 7.35334 7.82266 8.36685 8.97593 9.16614 10.00999 10.39291 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.046292 B = 0.012527 C = 0.010467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.710697 B = 2234.636030 C = 2674.345529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.126 3.874 3 N -0.451 5.451 4 N -0.161 5.161 5 N -0.036 5.036 6 N -0.398 5.398 7 C 0.455 3.545 8 N -0.399 5.399 9 C 0.095 3.905 10 C -0.295 4.295 11 H 0.115 0.885 12 C 0.029 3.971 13 N -0.868 5.868 14 Si 0.933 3.067 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.264 1.264 18 H 0.064 0.936 19 H 0.063 0.937 20 H 0.073 0.927 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.050 0.950 24 H 0.100 0.900 25 H 0.045 0.955 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 -4.956 -1.297 6.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.002 3.998 3 N -0.260 5.260 4 N -0.151 5.151 5 N -0.032 5.032 6 N -0.270 5.270 7 C 0.097 3.903 8 N -0.103 5.103 9 C -0.048 4.048 10 C -0.425 4.425 11 H 0.133 0.867 12 C -0.177 4.177 13 N -0.505 5.505 14 Si 0.758 3.242 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.188 1.188 18 H 0.083 0.917 19 H 0.082 0.918 20 H 0.091 0.909 21 H 0.106 0.894 22 H 0.116 0.884 23 H 0.068 0.932 24 H 0.118 0.882 25 H 0.063 0.937 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.252 -4.297 -1.898 6.336 hybrid contribution -0.316 -0.593 1.338 1.497 sum -4.568 -4.891 -0.561 6.715 Atomic orbital electron populations 1.22348 0.95234 1.02532 1.03059 1.21777 0.94645 0.78993 1.04379 1.50693 1.58377 1.13267 1.03631 1.82082 1.27407 0.99208 1.06429 1.77487 1.08336 1.13358 1.04000 1.74682 1.32817 1.17763 1.01785 1.21703 0.95815 0.88311 0.84464 1.41849 1.55172 1.16068 0.97251 1.22243 0.96798 0.83360 1.02403 1.19915 1.44565 0.93257 0.84718 0.86721 1.25302 0.96407 0.97119 0.98850 1.70187 1.44089 1.14840 1.21413 0.85791 0.78350 0.80582 0.79464 1.20152 1.20828 1.18802 0.91724 0.91803 0.90856 0.89354 0.88372 0.93166 0.88190 0.93726 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.58 37.16 0.36 -1.99 15 2 C 0.13 2.00 6.32 -4.04 -0.03 1.98 15 3 N -0.45 -9.73 3.69 -61.85 -0.23 -9.96 15 4 N -0.16 -3.74 13.93 60.35 0.84 -2.90 15 5 N -0.04 -0.89 13.38 60.35 0.81 -0.09 15 6 N -0.40 -10.48 11.56 30.10 0.35 -10.13 15 7 C 0.46 11.19 8.38 -320.36 -2.68 8.51 15 8 N -0.40 -9.73 3.11 -123.99 -0.39 -10.12 15 9 C 0.10 1.96 7.43 59.85 0.44 2.40 15 10 C -0.30 -7.64 9.55 -15.06 -0.14 -7.79 15 11 H 0.12 3.09 7.56 -52.49 -0.40 2.69 15 12 C 0.03 0.70 4.85 -17.46 -0.08 0.61 15 13 N -0.87 -21.28 10.80 55.49 0.60 -20.68 15 14 Si 0.93 19.26 29.62 -169.99 -5.04 14.23 15 15 H -0.28 -5.60 7.11 56.52 0.40 -5.20 15 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 17 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 18 H 0.06 0.96 6.55 -51.93 -0.34 0.62 15 19 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 20 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 21 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.10 1.51 5.06 -51.93 -0.26 1.24 15 23 H 0.05 1.04 7.51 -51.93 -0.39 0.65 15 24 H 0.10 2.18 6.04 -51.93 -0.31 1.87 15 25 H 0.04 0.77 3.39 -51.93 -0.18 0.60 15 26 H 0.27 6.28 8.31 -40.82 -0.34 5.94 15 LS Contribution 222.37 15.07 3.35 3.35 Total: -1.00 -28.92 222.37 -4.12 -33.04 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -2.28 Total: -0.48 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -2.14 Total: 3.73 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 1.98 Total: -53.87 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.04 Total: 14.23 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -28.92 -4.12 -33.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333673951.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.732 kcal (2) G-P(sol) polarization free energy of solvation -28.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds