Wall clock time and date at job start Sun Mar 29 2020 22:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47184 * 2 1 4 4 N 1.40587 * 127.38528 * 270.23598 * 3 2 1 5 5 N 1.28901 * 106.83735 * 180.02562 * 4 3 2 6 6 N 1.28420 * 110.35394 * 0.02562 * 5 4 3 7 7 C 1.31562 * 110.50035 * 359.97438 * 6 5 4 8 8 N 1.38217 * 126.46331 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00694 * 176.16215 * 8 7 6 10 10 C 1.36932 * 119.99580 * 356.16331 * 8 7 6 11 11 H 1.07997 * 120.00533 * 10.68848 * 10 8 7 12 12 C 1.38807 * 120.00050 * 190.69507 * 10 8 7 13 13 N 1.31565 * 119.99835 * 25.15027 * 12 10 8 14 14 Si 1.86807 * 119.99940 * 205.15695 * 12 10 8 15 15 H 1.48497 * 109.46950 * 94.99531 * 14 12 10 16 16 H 1.48503 * 109.46786 * 214.99260 * 14 12 10 17 17 H 1.48499 * 109.46677 * 334.99242 * 14 12 10 18 18 H 1.09005 * 109.46867 * 300.00242 * 1 2 3 19 19 H 1.09005 * 109.46760 * 59.99881 * 1 2 3 20 20 H 1.08996 * 109.47367 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47139 * 239.99420 * 2 1 3 22 22 H 1.09002 * 109.46947 * 119.99627 * 2 1 3 23 23 H 1.08998 * 109.47012 * 84.12483 * 9 8 7 24 24 H 1.08999 * 109.47581 * 204.12543 * 9 8 7 25 25 H 1.08998 * 109.46808 * 324.12760 * 9 8 7 26 26 H 0.97005 * 119.99938 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2985 2.1875 -1.1171 5 7 2.7032 3.3247 -0.6646 6 7 2.7075 3.3185 0.6196 7 6 2.2976 2.1548 1.0761 8 7 2.1747 1.7903 2.4037 9 6 1.6222 0.4799 2.7555 10 6 2.5693 2.6541 3.3901 11 1 2.8129 3.6776 3.1461 12 6 2.6566 2.2143 4.7038 13 7 2.8536 0.9387 4.9587 14 14 2.4942 3.4336 6.1097 15 1 1.0872 3.4574 6.5842 16 1 3.3858 3.0249 7.2248 17 1 2.8805 4.7876 5.6377 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 2.4125 -0.2698 2.7172 24 1 1.2071 0.5190 3.7627 25 1 0.8359 0.2154 2.0485 26 1 2.9142 0.6313 5.8767 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333673951.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:15 Heat of formation + Delta-G solvation = 125.303005 kcal Electronic energy + Delta-G solvation = -12780.870304 eV Core-core repulsion = 10511.873768 eV Total energy + Delta-G solvation = -2268.996536 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.26989 -38.68794 -36.32444 -34.03041 -31.73798 -31.55842 -28.56101 -26.41363 -24.95791 -23.13717 -22.26126 -19.34923 -18.24967 -17.47620 -17.08832 -16.19729 -15.75149 -15.50751 -14.92350 -14.21693 -14.00194 -13.47619 -13.26392 -13.10705 -12.84325 -12.58708 -12.28493 -12.17167 -12.00903 -11.82646 -11.28648 -11.01114 -10.72269 -9.37905 -8.49458 -5.86560 0.55041 1.20331 1.43332 1.49128 1.61449 1.88843 2.25383 2.70146 2.92006 3.61660 4.05015 4.19140 4.26658 4.35218 4.60104 4.72230 4.75439 4.84269 5.10293 5.12753 5.23256 5.40840 5.51492 6.02140 6.50105 7.11314 7.28423 8.13126 8.53874 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.046292 B = 0.012527 C = 0.010467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.710697 B = 2234.636030 C = 2674.345529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.440 5.440 4 N -0.153 5.153 5 N -0.053 5.053 6 N -0.434 5.434 7 C 0.442 3.558 8 N -0.410 5.410 9 C 0.102 3.898 10 C -0.330 4.330 11 H 0.092 0.908 12 C 0.003 3.997 13 N -0.881 5.881 14 Si 0.994 3.006 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.271 1.271 18 H 0.049 0.951 19 H 0.058 0.942 20 H 0.116 0.884 21 H 0.114 0.886 22 H 0.107 0.893 23 H 0.047 0.953 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 -6.227 -0.974 8.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.250 5.250 4 N -0.143 5.143 5 N -0.050 5.050 6 N -0.306 5.306 7 C 0.083 3.917 8 N -0.115 5.115 9 C -0.040 4.040 10 C -0.459 4.459 11 H 0.110 0.890 12 C -0.201 4.201 13 N -0.518 5.518 14 Si 0.817 3.183 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.196 1.196 18 H 0.068 0.932 19 H 0.077 0.923 20 H 0.134 0.866 21 H 0.132 0.868 22 H 0.124 0.876 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.109 -5.611 -1.589 7.753 hybrid contribution -0.053 -0.303 1.158 1.198 sum -5.162 -5.913 -0.431 7.861 Atomic orbital electron populations 1.22303 0.92975 1.05017 1.02018 1.22335 0.96482 0.76188 1.06112 1.51006 1.57320 1.14527 1.02110 1.81939 1.26053 0.98996 1.07302 1.77457 1.09546 1.14197 1.03757 1.74568 1.34090 1.19510 1.02422 1.21753 0.96146 0.88519 0.85257 1.42015 1.55627 1.17017 0.96836 1.22271 0.97352 0.81751 1.02627 1.19857 1.47033 0.93034 0.85987 0.88986 1.25993 0.95282 0.98764 1.00073 1.70224 1.43455 1.15800 1.22297 0.84899 0.78719 0.78079 0.76621 1.19072 1.20041 1.19600 0.93193 0.92325 0.86565 0.86765 0.87553 0.93467 0.89468 0.90387 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 9.58 71.98 0.69 -3.22 15 2 C 0.11 3.19 6.32 86.38 0.55 3.73 15 3 N -0.44 -18.42 3.69 -349.59 -1.29 -19.71 15 4 N -0.15 -6.95 13.93 37.02 0.52 -6.43 15 5 N -0.05 -2.69 13.38 37.02 0.50 -2.19 15 6 N -0.43 -23.16 11.56 -58.67 -0.68 -23.83 15 7 C 0.44 21.73 8.38 260.63 2.18 23.92 15 8 N -0.41 -19.98 3.11 -546.19 -1.70 -21.68 15 9 C 0.10 4.08 7.43 127.77 0.95 5.03 15 10 C -0.33 -17.29 9.55 84.03 0.80 -16.48 15 11 H 0.09 5.13 7.56 -2.91 -0.02 5.11 15 12 C 0.00 0.16 4.85 84.87 0.41 0.57 15 13 N -0.88 -42.40 10.80 21.65 0.23 -42.16 15 14 Si 0.99 39.00 29.62 68.60 2.03 41.03 15 15 H -0.27 -9.97 7.11 99.48 0.71 -9.26 15 16 H -0.28 -10.42 7.11 99.48 0.71 -9.71 15 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 18 H 0.05 1.35 6.55 -2.38 -0.02 1.33 15 19 H 0.06 1.48 8.14 -2.38 -0.02 1.46 15 20 H 0.12 1.80 8.14 -2.39 -0.02 1.78 15 21 H 0.11 2.77 8.14 -2.39 -0.02 2.75 15 22 H 0.11 2.96 5.06 -2.39 -0.01 2.95 15 23 H 0.05 1.89 7.51 -2.39 -0.02 1.88 15 24 H 0.09 3.72 6.04 -2.39 -0.01 3.70 15 25 H 0.08 2.54 3.39 -2.39 -0.01 2.53 15 26 H 0.28 12.49 8.31 -92.70 -0.77 11.72 15 Total: -1.00 -61.78 222.37 6.39 -55.39 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.20 Total: 6.04 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 5.58 Total: 13.55 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -2.42 Total: -116.00 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -61.78 6.39 -55.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333673951.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.691 kcal (2) G-P(sol) polarization free energy of solvation -61.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds