Wall clock time and date at job start Sun Mar 29 2020 21:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99870 * 2 1 4 4 H 1.09000 * 109.46917 * 324.99892 * 3 2 1 5 5 C 1.52993 * 109.47269 * 84.99904 * 3 2 1 6 6 C 1.50692 * 109.46945 * 205.00102 * 3 2 1 7 7 C 1.34949 * 125.49127 * 154.72092 * 6 3 2 8 8 N 1.36666 * 106.73338 * 179.84342 * 7 6 3 9 9 C 1.37563 * 126.88956 * 180.14739 * 8 7 6 10 10 H 1.08002 * 119.99961 * 0.28199 * 9 8 7 11 11 C 1.39005 * 120.00173 * 180.28324 * 9 8 7 12 12 N 1.31253 * 120.00244 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00246 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46986 * 59.99891 * 13 11 9 15 15 H 1.48494 * 109.47645 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47239 * 299.99955 * 13 11 9 17 17 N 1.40325 * 106.22433 * 0.40427 * 8 7 6 18 18 N 1.28753 * 108.03129 * 359.74521 * 17 8 7 19 19 H 1.08998 * 109.46961 * 60.00043 * 1 2 3 20 20 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46798 * 300.00327 * 1 2 3 22 22 H 1.00901 * 110.99869 * 236.04711 * 2 1 3 23 23 H 1.09006 * 109.47343 * 180.02562 * 5 3 2 24 24 H 1.09004 * 109.47587 * 300.00069 * 5 3 2 25 25 H 1.09000 * 109.47161 * 60.00137 * 5 3 2 26 26 H 1.08004 * 126.63232 * 359.97438 * 7 6 3 27 27 H 0.97000 * 120.00496 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0608 1.8927 1.4369 6 6 3.3776 1.3789 -0.6005 7 6 3.9665 2.4360 -1.1979 8 7 5.2066 2.0222 -1.5963 9 6 6.1582 2.7730 -2.2468 10 1 5.9579 3.8063 -2.4891 11 6 7.3775 2.2019 -2.5922 12 7 7.6211 0.9463 -2.2974 13 14 8.6700 3.2216 -3.4749 14 1 9.0448 4.3842 -2.6303 15 1 9.8715 2.3866 -3.7280 16 1 8.1214 3.7051 -4.7673 17 7 5.3123 0.6761 -1.2142 18 7 4.2143 0.3397 -0.6321 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8306 -0.5261 -0.7814 23 1 2.4510 2.9105 1.4369 24 1 1.0611 1.8872 1.8713 25 1 2.7166 1.2518 2.0264 26 1 3.5410 3.4194 -1.3331 27 1 8.4721 0.5478 -2.5381 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352959632.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:32 Heat of formation + Delta-G solvation = 87.970400 kcal Electronic energy + Delta-G solvation = -12176.543809 eV Core-core repulsion = 9971.354321 eV Total energy + Delta-G solvation = -2205.189489 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.11912 -36.19969 -33.98289 -31.27961 -30.64905 -27.76708 -25.83210 -24.67811 -21.68462 -21.01512 -19.43570 -17.52428 -15.57899 -15.31973 -14.56023 -14.16292 -14.04074 -13.43777 -12.94725 -12.50477 -12.13681 -11.84085 -11.58930 -11.46219 -11.27311 -11.02561 -10.76522 -10.57573 -9.89329 -9.48432 -9.20122 -8.68105 -7.93125 -7.36967 -6.81000 -4.61647 2.83847 2.95268 3.00276 3.33830 3.69339 4.12964 4.64900 4.76898 4.82383 5.51504 5.67280 5.75523 5.88209 6.07181 6.11925 6.27588 6.33402 6.37605 6.73903 6.84423 6.87267 7.05710 7.62529 7.78518 7.91872 7.96320 8.52409 9.13393 10.15944 10.25097 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.087086 B = 0.008393 C = 0.008075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.443165 B = 3335.315548 C = 3466.751208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.682 5.682 3 C 0.184 3.816 4 H 0.040 0.960 5 C -0.129 4.129 6 C -0.081 4.081 7 C -0.116 4.116 8 N -0.148 5.148 9 C -0.316 4.316 10 H 0.119 0.881 11 C 0.047 3.953 12 N -0.760 5.760 13 Si 0.942 3.058 14 H -0.264 1.264 15 H -0.274 1.274 16 H -0.264 1.264 17 N -0.095 5.095 18 N -0.311 5.311 19 H 0.014 0.986 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.351 0.649 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.153 0.847 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 3.990 0.442 7.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.314 5.314 3 C 0.073 3.927 4 H 0.058 0.942 5 C -0.187 4.187 6 C -0.229 4.229 7 C -0.271 4.271 8 N 0.081 4.919 9 C -0.453 4.453 10 H 0.137 0.863 11 C -0.172 4.172 12 N -0.386 5.386 13 Si 0.765 3.235 14 H -0.188 1.188 15 H -0.198 1.198 16 H -0.189 1.189 17 N -0.072 5.072 18 N -0.171 5.171 19 H 0.033 0.967 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.170 0.830 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.170 0.830 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.106 2.361 1.153 5.743 hybrid contribution -0.145 1.841 -1.412 2.324 sum -5.251 4.201 -0.258 6.730 Atomic orbital electron populations 1.22227 0.89236 1.01071 0.99646 1.60326 1.05853 1.14173 1.51063 1.19470 0.89667 0.88675 0.94924 0.94197 1.21733 1.00563 1.00234 0.96212 1.20676 0.98512 0.92102 1.11576 1.22233 0.90076 1.00990 1.13805 1.46708 1.08040 1.09361 1.27747 1.20088 0.93974 0.95721 1.35477 0.86304 1.25772 0.98743 0.96199 0.96525 1.70135 1.23513 1.11045 1.33911 0.85765 0.78747 0.79317 0.79668 1.18846 1.19829 1.18868 1.82566 1.14013 0.89910 1.20684 1.74001 1.00248 1.25995 1.16853 0.96717 0.92040 0.92208 0.83010 0.92903 0.93648 0.92070 0.82951 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.50 60.07 0.63 1.02 15 2 N -0.68 -12.34 6.55 -115.25 -0.76 -13.10 15 3 C 0.18 3.49 3.06 -68.87 -0.21 3.28 15 4 H 0.04 0.70 7.80 -51.93 -0.40 0.29 15 5 C -0.13 -2.20 9.40 37.15 0.35 -1.85 15 6 C -0.08 -1.92 5.84 -83.06 -0.48 -2.40 15 7 C -0.12 -2.81 11.47 -16.56 -0.19 -3.00 15 8 N -0.15 -4.08 3.78 -11.47 -0.04 -4.12 15 9 C -0.32 -8.22 10.31 -14.69 -0.15 -8.37 15 10 H 0.12 2.73 7.83 -52.49 -0.41 2.32 15 11 C 0.05 1.19 5.50 -17.51 -0.10 1.09 15 12 N -0.76 -20.72 11.89 55.49 0.66 -20.06 15 13 Si 0.94 18.20 29.55 -169.99 -5.02 13.17 15 14 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 16 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 17 N -0.09 -2.82 11.73 60.35 0.71 -2.12 15 18 N -0.31 -8.53 11.78 33.16 0.39 -8.14 15 19 H 0.01 0.19 8.05 -51.93 -0.42 -0.23 15 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.06 0.76 7.44 -51.93 -0.39 0.38 15 22 H 0.35 6.82 8.13 -39.29 -0.32 6.50 15 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 24 H 0.04 0.66 7.45 -51.93 -0.39 0.27 15 25 H 0.06 1.16 8.14 -51.93 -0.42 0.73 15 26 H 0.15 3.09 8.06 -52.48 -0.42 2.67 15 27 H 0.28 6.99 8.31 -40.82 -0.34 6.65 15 LS Contribution 240.17 15.07 3.62 3.62 Total: -1.00 -30.78 240.17 -3.75 -34.53 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -3.15 Total: 6.46 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.15 Total: -10.23 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.96 Total: -47.54 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.17 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.78 -3.75 -34.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352959632.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.502 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds