Wall clock time and date at job start Sun Mar 29 2020 21:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46906 * 110.99716 * 2 1 4 4 H 1.08996 * 109.46825 * 35.00670 * 3 2 1 5 5 C 1.52997 * 109.47302 * 274.99847 * 3 2 1 6 6 C 1.50708 * 109.46619 * 155.00022 * 3 2 1 7 7 C 1.34942 * 125.48248 * 205.00037 * 6 3 2 8 8 N 1.36670 * 106.72471 * 179.97438 * 7 6 3 9 9 C 1.37570 * 126.88257 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00355 * 0.02562 * 9 8 7 11 11 C 1.39019 * 119.99730 * 180.02562 * 9 8 7 12 12 N 1.31255 * 119.99597 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99960 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47118 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47193 * 120.00099 * 13 11 9 16 16 H 1.48500 * 109.47154 * 240.00151 * 13 11 9 17 17 N 1.40325 * 106.22793 * 0.02562 * 8 7 6 18 18 N 1.28753 * 108.02821 * 359.72595 * 17 8 7 19 19 H 1.09000 * 109.47184 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.46868 * 300.00084 * 1 2 3 21 21 H 1.09007 * 109.46973 * 59.99616 * 1 2 3 22 22 H 1.00900 * 110.99849 * 236.05397 * 2 1 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 24 24 H 1.09001 * 109.46832 * 60.00356 * 5 3 2 25 25 H 1.09004 * 109.47261 * 300.00337 * 5 3 2 26 26 H 1.08004 * 126.64238 * 359.96729 * 7 6 3 27 27 H 0.97005 * 119.99344 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3398 2.0123 0.5895 5 6 2.0609 1.8927 -1.4370 6 6 3.3777 1.3789 0.6005 7 6 3.9685 2.4375 1.1932 8 7 5.2062 2.0219 1.5972 9 6 6.1578 2.7728 2.2477 10 1 5.9576 3.8061 2.4897 11 6 7.3770 2.2015 2.5936 12 7 7.6204 0.9458 2.2989 13 14 8.6688 3.2209 3.4775 14 1 8.1520 4.5963 3.6927 15 1 8.9783 2.5980 4.7896 16 1 9.9029 3.2785 2.6536 17 7 5.3123 0.6761 1.2142 18 7 4.2123 0.3383 0.6365 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8306 -0.5260 -0.7814 23 1 2.4519 2.9102 -1.4370 24 1 1.0611 1.8873 -1.8713 25 1 2.7166 1.2518 -2.0265 26 1 3.5453 3.4226 1.3232 27 1 8.4714 0.5473 2.5400 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352959638.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:34 Heat of formation + Delta-G solvation = 88.666700 kcal Electronic energy + Delta-G solvation = -12169.041434 eV Core-core repulsion = 9963.882139 eV Total energy + Delta-G solvation = -2205.159295 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.00511 -36.35403 -33.92793 -31.20165 -30.59552 -27.71506 -25.69169 -24.58369 -21.94781 -21.03882 -19.41897 -17.43965 -15.49334 -15.30242 -14.46544 -14.13492 -13.76816 -13.70732 -12.89393 -12.36050 -12.19637 -11.92891 -11.77984 -11.44146 -11.32399 -11.07049 -10.84294 -10.52949 -9.83337 -9.44850 -9.06692 -8.59858 -7.88114 -7.25714 -6.74911 -4.54081 2.86559 2.99134 3.05936 3.41061 3.73762 4.21778 4.70616 4.83913 4.88712 5.51256 5.59222 5.65987 5.80049 5.85833 6.11012 6.16501 6.31263 6.40779 6.54832 6.82181 6.97805 7.15997 7.60677 7.90095 7.91588 8.00300 8.60258 9.22167 10.22507 10.36403 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.087441 B = 0.008374 C = 0.008058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.139484 B = 3342.775766 C = 3474.094939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.677 5.677 3 C 0.183 3.817 4 H 0.074 0.926 5 C -0.172 4.172 6 C -0.061 4.061 7 C -0.119 4.119 8 N -0.150 5.150 9 C -0.317 4.317 10 H 0.119 0.881 11 C 0.047 3.953 12 N -0.761 5.761 13 Si 0.941 3.059 14 H -0.261 1.261 15 H -0.271 1.271 16 H -0.271 1.271 17 N -0.097 5.097 18 N -0.308 5.308 19 H 0.061 0.939 20 H 0.059 0.941 21 H 0.014 0.986 22 H 0.344 0.656 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.152 0.848 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.558 4.007 -2.450 8.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.307 5.307 3 C 0.071 3.929 4 H 0.092 0.908 5 C -0.232 4.232 6 C -0.209 4.209 7 C -0.273 4.273 8 N 0.078 4.922 9 C -0.453 4.453 10 H 0.137 0.863 11 C -0.172 4.172 12 N -0.388 5.388 13 Si 0.764 3.236 14 H -0.185 1.185 15 H -0.196 1.196 16 H -0.197 1.197 17 N -0.074 5.074 18 N -0.168 5.168 19 H 0.080 0.920 20 H 0.078 0.922 21 H 0.032 0.968 22 H 0.162 0.838 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.169 0.831 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.446 2.379 -1.780 6.204 hybrid contribution -0.152 1.832 -0.402 1.882 sum -5.598 4.212 -2.181 7.337 Atomic orbital electron populations 1.22204 0.89102 1.01111 0.99629 1.60279 1.05813 1.13982 1.50588 1.19483 0.91187 0.88725 0.93464 0.90787 1.22459 1.00375 1.02286 0.98057 1.20482 0.97725 0.91339 1.11400 1.22205 0.90271 1.00855 1.14012 1.46696 1.08177 1.09366 1.27914 1.20146 0.93984 0.95712 1.35464 0.86333 1.25763 0.98742 0.96167 0.96560 1.70168 1.23269 1.11021 1.34325 0.85659 0.79375 0.79612 0.78933 1.18464 1.19641 1.19661 1.82550 1.14059 0.89980 1.20815 1.73979 1.00110 1.25630 1.17059 0.92046 0.92167 0.96788 0.83775 0.92090 0.93561 0.92454 0.83092 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.50 60.07 0.63 1.03 15 2 N -0.68 -11.98 6.41 -115.24 -0.74 -12.72 15 3 C 0.18 3.39 3.03 -68.86 -0.21 3.19 15 4 H 0.07 1.27 7.80 -51.93 -0.40 0.86 15 5 C -0.17 -2.72 9.14 37.16 0.34 -2.38 15 6 C -0.06 -1.47 6.08 -83.05 -0.50 -1.98 15 7 C -0.12 -2.91 11.47 -16.57 -0.19 -3.10 15 8 N -0.15 -4.22 3.78 -11.47 -0.04 -4.26 15 9 C -0.32 -8.38 10.31 -14.69 -0.15 -8.53 15 10 H 0.12 2.79 7.83 -52.49 -0.41 2.38 15 11 C 0.05 1.20 5.50 -17.51 -0.10 1.10 15 12 N -0.76 -21.10 11.89 55.50 0.66 -20.44 15 13 Si 0.94 18.52 29.55 -169.99 -5.02 13.50 15 14 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 15 H -0.27 -5.29 7.11 56.52 0.40 -4.88 15 16 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 17 N -0.10 -2.94 11.73 60.35 0.71 -2.23 15 18 N -0.31 -8.59 12.09 33.16 0.40 -8.19 15 19 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.06 0.80 8.05 -51.93 -0.42 0.38 15 21 H 0.01 0.17 7.44 -51.93 -0.39 -0.22 15 22 H 0.34 5.95 8.56 -39.29 -0.34 5.61 15 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.05 0.61 7.45 -51.93 -0.39 0.22 15 25 H 0.06 0.96 8.13 -51.93 -0.42 0.54 15 26 H 0.15 3.09 8.06 -52.48 -0.42 2.67 15 27 H 0.28 7.01 8.31 -40.82 -0.34 6.67 15 LS Contribution 240.71 15.07 3.63 3.63 Total: -1.00 -31.91 240.71 -3.76 -35.67 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.17 Total: 5.73 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -0.18 Total: -10.68 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.99 Total: -47.85 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.91 -3.76 -35.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352959638.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.338 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds