Wall clock time and date at job start Sun Mar 29 2020 21:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 119.99959 * 2 1 4 4 C 1.53001 * 109.47318 * 125.00258 * 3 2 1 5 5 C 1.52996 * 109.47311 * 174.93472 * 4 3 2 6 6 H 1.08999 * 109.87593 * 306.17357 * 5 4 3 7 7 C 1.54318 * 110.01273 * 67.27227 * 5 4 3 8 8 C 1.55155 * 102.94505 * 141.68146 * 7 5 4 9 9 C 1.54913 * 101.58218 * 324.49814 * 8 7 5 10 10 N 1.47019 * 109.88217 * 185.15796 * 5 4 3 11 11 C 1.36939 * 125.64956 * 61.22051 * 10 5 4 12 12 H 1.08004 * 120.00015 * 14.61321 * 11 10 5 13 13 C 1.38808 * 120.00161 * 194.61477 * 11 10 5 14 14 N 1.31620 * 120.00353 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00280 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46964 * 89.99945 * 15 13 11 17 17 H 1.48502 * 109.47376 * 210.00347 * 15 13 11 18 18 H 1.48503 * 109.46788 * 330.00238 * 15 13 11 19 19 H 1.08002 * 119.99805 * 359.97438 * 1 2 3 20 20 H 1.07999 * 120.00157 * 180.02562 * 1 2 3 21 21 H 1.07995 * 119.99686 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.47287 * 5.00014 * 3 2 1 23 23 H 1.09007 * 109.47459 * 245.00119 * 3 2 1 24 24 H 1.09001 * 109.46831 * 54.92875 * 4 3 2 25 25 H 1.08999 * 109.46801 * 294.93484 * 4 3 2 26 26 H 1.09003 * 110.71999 * 260.04311 * 7 5 4 27 27 H 1.09000 * 110.72168 * 23.31569 * 7 5 4 28 28 H 1.09007 * 111.00313 * 82.56876 * 8 7 5 29 29 H 1.08997 * 111.00851 * 206.38420 * 8 7 5 30 30 H 1.08995 * 110.36401 * 278.16744 * 9 8 7 31 31 H 1.09001 * 110.36421 * 155.84495 * 9 8 7 32 32 H 0.96999 * 120.00867 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8887 2.6008 1.1101 6 1 4.3696 2.6691 0.1343 7 6 3.0076 3.8449 1.3492 8 6 3.9260 4.7633 2.1979 9 6 4.6860 3.7281 3.0642 10 7 4.9079 2.5776 2.1693 11 6 5.8961 1.6395 2.3057 12 1 6.1250 0.9733 1.4870 13 6 6.6037 1.5448 3.4962 14 7 6.3245 2.3563 4.4941 15 14 7.9512 0.2646 3.6825 16 1 9.2474 0.8433 3.2467 17 1 8.0473 -0.1495 5.1054 18 1 7.6300 -0.9179 2.8435 19 1 -0.5400 0.9353 0.0004 20 1 -0.5400 -0.9353 0.0004 21 1 1.8499 -0.9353 -0.0004 22 1 1.3585 2.1316 0.0896 23 1 2.6213 1.4026 -0.9314 24 1 3.6819 0.4566 1.1409 25 1 2.4722 1.3262 2.1150 26 1 2.7512 4.3234 0.4039 27 1 2.1081 3.5795 1.9046 28 1 4.6139 5.3220 1.5632 29 1 3.3371 5.4372 2.8202 30 1 4.0798 3.4317 3.9201 31 1 5.6391 4.1390 3.3973 32 1 6.8187 2.2899 5.3262 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560200328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:11 Heat of formation + Delta-G solvation = 25.620069 kcal Electronic energy + Delta-G solvation = -12487.220115 eV Core-core repulsion = 10448.293168 eV Total energy + Delta-G solvation = -2038.926948 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -37.79288 -35.01634 -32.48928 -30.72650 -29.19507 -26.35510 -24.46959 -22.34747 -20.21411 -19.41264 -19.09289 -16.67317 -15.33373 -14.70421 -14.37686 -13.82869 -13.79957 -12.68168 -12.29692 -12.15043 -11.82512 -11.74571 -11.04405 -10.87353 -10.81787 -10.68181 -10.43423 -10.04614 -9.91232 -9.68993 -9.62208 -9.54925 -9.03567 -8.51655 -6.69942 -5.68626 -3.03168 2.50119 3.42043 3.47295 3.49115 4.53660 5.10855 5.36816 5.47064 5.51611 5.65837 5.72050 5.82956 5.91795 6.03065 6.10831 6.21100 6.37296 6.41426 6.54605 6.62580 6.78523 6.79789 6.84371 6.97690 7.10857 7.28013 7.61414 7.69781 7.86262 8.36156 9.26966 9.88656 10.58792 11.43864 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.032830 B = 0.011061 C = 0.008781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.672423 B = 2530.877144 C = 3188.069758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.137 4.137 3 C -0.095 4.095 4 C -0.119 4.119 5 C 0.160 3.840 6 H 0.030 0.970 7 C -0.124 4.124 8 C -0.150 4.150 9 C 0.173 3.827 10 N -0.597 5.597 11 C -0.224 4.224 12 H 0.074 0.926 13 C -0.007 4.007 14 N -0.919 5.919 15 Si 0.908 3.092 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.281 1.281 19 H 0.093 0.907 20 H 0.090 0.910 21 H 0.105 0.895 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.885 0.150 -6.714 10.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.155 4.155 3 C -0.133 4.133 4 C -0.159 4.159 5 C 0.053 3.947 6 H 0.048 0.952 7 C -0.162 4.162 8 C -0.189 4.189 9 C 0.048 3.952 10 N -0.322 5.322 11 C -0.353 4.353 12 H 0.092 0.908 13 C -0.204 4.204 14 N -0.566 5.566 15 Si 0.739 3.261 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.207 1.207 19 H 0.111 0.889 20 H 0.109 0.891 21 H 0.123 0.877 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.711 0.091 -6.532 10.106 hybrid contribution 0.647 -0.820 0.242 1.072 sum -7.064 -0.730 -6.289 9.487 Atomic orbital electron populations 1.23734 0.95998 1.01236 1.04152 1.23130 0.95946 0.99131 0.97308 1.20848 0.98336 0.94345 0.99774 1.22044 0.96896 1.00723 0.96239 1.20970 0.88921 0.92016 0.92813 0.95203 1.22583 0.97987 0.96669 0.98969 1.23012 0.98518 0.98157 0.99211 1.21400 0.98150 0.85128 0.90511 1.44567 1.30452 1.28021 1.29116 1.18977 1.08871 1.10217 0.97217 0.90837 1.24896 1.00519 0.99325 0.95626 1.69941 1.43094 1.39328 1.04258 0.86174 0.81751 0.81259 0.76933 1.21640 1.21708 1.20676 0.88904 0.89126 0.87731 0.91986 0.91464 0.91916 0.92578 0.92642 0.92094 0.92513 0.92585 0.95899 0.91312 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.68 14.32 29.01 0.42 -2.27 16 2 C -0.14 -1.92 9.52 -36.03 -0.34 -2.27 16 3 C -0.10 -1.45 5.43 -27.89 -0.15 -1.60 16 4 C -0.12 -2.29 4.70 -26.73 -0.13 -2.42 16 5 C 0.16 3.37 3.16 -66.96 -0.21 3.16 16 6 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 7 C -0.12 -2.25 5.71 -24.90 -0.14 -2.39 16 8 C -0.15 -2.94 7.08 -24.58 -0.17 -3.12 16 9 C 0.17 4.32 5.41 -2.53 -0.01 4.31 16 10 N -0.60 -15.50 3.13 -162.58 -0.51 -16.01 16 11 C -0.22 -6.31 9.70 -15.06 -0.15 -6.46 16 12 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 13 C -0.01 -0.21 5.47 -17.43 -0.10 -0.30 16 14 N -0.92 -27.42 10.57 55.49 0.59 -26.83 16 15 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H 0.09 1.09 7.84 -52.49 -0.41 0.68 16 20 H 0.09 1.00 8.06 -52.49 -0.42 0.57 16 21 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 22 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16 23 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 24 H 0.06 1.31 7.83 -51.93 -0.41 0.90 16 25 H 0.06 1.15 8.03 -51.93 -0.42 0.73 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 1.07 7.78 -51.93 -0.40 0.66 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 31 H 0.07 1.90 6.93 -51.93 -0.36 1.54 16 32 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 261.79 15.07 3.95 3.95 Total: -1.00 -29.70 261.79 -7.29 -36.99 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.30 Total: -2.09 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.99 Total: -13.35 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.08 Total: -42.84 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.70 -7.29 -36.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560200328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.605 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds