Wall clock time and date at job start Sun Mar 29 2020 21:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00296 * 2 1 4 4 C 1.53003 * 109.46911 * 125.00148 * 3 2 1 5 5 C 1.53008 * 109.47131 * 185.08744 * 4 3 2 6 6 H 1.08994 * 109.87213 * 55.67489 * 5 4 3 7 7 C 1.54330 * 109.87971 * 294.65918 * 5 4 3 8 8 C 1.55162 * 102.93814 * 218.39022 * 7 5 4 9 9 C 1.54906 * 101.58130 * 35.50134 * 8 7 5 10 10 N 1.47020 * 109.87981 * 176.68910 * 5 4 3 11 11 C 1.36931 * 125.64947 * 298.31270 * 10 5 4 12 12 H 1.07996 * 120.00339 * 346.85720 * 11 10 5 13 13 C 1.38817 * 119.99835 * 166.86323 * 11 10 5 14 14 N 1.31619 * 120.00130 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47110 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47374 * 119.99438 * 15 13 11 18 18 H 1.48499 * 109.47068 * 239.99812 * 15 13 11 19 19 H 1.08000 * 119.99587 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.00295 * 179.97438 * 1 2 3 21 21 H 1.08000 * 119.99715 * 179.72935 * 2 1 3 22 22 H 1.08998 * 109.47397 * 245.00103 * 3 2 1 23 23 H 1.09004 * 109.47247 * 5.00711 * 3 2 1 24 24 H 1.08992 * 109.47341 * 305.08891 * 4 3 2 25 25 H 1.09003 * 109.46885 * 65.09029 * 4 3 2 26 26 H 1.08995 * 110.72026 * 336.75306 * 7 5 4 27 27 H 1.08994 * 110.72125 * 100.03026 * 7 5 4 28 28 H 1.08999 * 111.00170 * 153.57891 * 8 7 5 29 29 H 1.09002 * 111.00077 * 277.42998 * 8 7 5 30 30 H 1.08999 * 110.36691 * 81.83477 * 9 8 7 31 31 H 1.09007 * 110.36595 * 204.03987 * 9 8 7 32 32 H 0.96994 * 120.00160 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7078 2.7051 1.2566 6 1 2.9501 3.4864 1.3155 7 6 4.5925 2.9246 0.0113 8 6 5.8297 3.6611 0.5896 9 6 5.9716 2.9882 1.9776 10 7 4.5841 2.7686 2.4354 11 6 4.1799 2.6448 3.7379 12 1 3.1300 2.6987 3.9850 13 6 5.1199 2.4499 4.7407 14 7 6.3994 2.3838 4.4395 15 14 4.5686 2.2803 6.5174 16 1 3.0893 2.3894 6.5892 17 1 4.9939 0.9584 7.0436 18 1 5.1841 3.3587 7.3318 19 1 -0.5399 0.9353 -0.0004 20 1 -0.5400 -0.9353 -0.0004 21 1 1.8500 -0.9353 0.0044 22 1 2.6213 1.4025 -0.9314 23 1 1.3587 2.1316 0.0897 24 1 2.4887 1.1451 2.1058 25 1 3.7946 0.5629 1.0457 26 1 4.8825 1.9706 -0.4288 27 1 4.0798 3.5483 -0.7209 28 1 6.7129 3.4820 -0.0236 29 1 5.6364 4.7291 0.6910 30 1 6.4972 2.0377 1.8864 31 1 6.4989 3.6479 2.6669 32 1 7.0562 2.2480 5.1402 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560200329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:13 Heat of formation + Delta-G solvation = 25.927379 kcal Electronic energy + Delta-G solvation = -12482.843072 eV Core-core repulsion = 10443.929451 eV Total energy + Delta-G solvation = -2038.913622 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.78634 -35.01070 -32.49091 -30.71210 -29.20213 -26.32949 -24.48344 -22.37941 -20.16350 -19.48176 -19.05787 -16.63815 -15.13246 -15.01518 -14.37468 -13.91608 -13.40663 -13.15652 -12.32901 -11.90222 -11.74318 -11.56755 -11.14866 -11.01019 -10.79636 -10.70829 -10.46521 -10.00923 -9.93608 -9.69936 -9.60173 -9.49639 -9.03257 -8.53007 -6.70976 -5.68083 -3.02304 2.50555 3.42010 3.47994 3.50224 4.53885 5.10757 5.37624 5.47474 5.49614 5.63941 5.71592 5.83513 5.96316 6.00222 6.11016 6.20402 6.34968 6.41787 6.51616 6.64500 6.76585 6.81897 6.83544 6.98346 7.10563 7.27155 7.61971 7.68721 7.86692 8.35694 9.26794 9.88638 10.58589 11.44302 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.030415 B = 0.011537 C = 0.008777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.382207 B = 2426.286680 C = 3189.315732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 C -0.095 4.095 4 C -0.119 4.119 5 C 0.160 3.840 6 H 0.030 0.970 7 C -0.124 4.124 8 C -0.150 4.150 9 C 0.171 3.829 10 N -0.598 5.598 11 C -0.221 4.221 12 H 0.075 0.925 13 C -0.009 4.009 14 N -0.920 5.920 15 Si 0.908 3.092 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.291 1.291 19 H 0.093 0.907 20 H 0.090 0.910 21 H 0.104 0.896 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.022 0.978 31 H 0.072 0.928 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -1.202 -8.604 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.156 4.156 3 C -0.133 4.133 4 C -0.159 4.159 5 C 0.053 3.947 6 H 0.048 0.952 7 C -0.162 4.162 8 C -0.189 4.189 9 C 0.047 3.953 10 N -0.322 5.322 11 C -0.350 4.350 12 H 0.092 0.908 13 C -0.205 4.205 14 N -0.567 5.567 15 Si 0.739 3.261 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.218 1.218 19 H 0.111 0.889 20 H 0.109 0.891 21 H 0.122 0.878 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.636 -1.217 -8.371 10.165 hybrid contribution -0.258 -0.295 1.006 1.079 sum -5.894 -1.512 -7.366 9.554 Atomic orbital electron populations 1.23741 0.96017 1.01272 1.03930 1.23100 0.95958 0.99074 0.97507 1.20845 0.98347 0.94384 0.99699 1.22049 0.97395 0.99871 0.96608 1.20957 0.92398 0.93825 0.87543 0.95243 1.22587 0.97112 0.99621 0.96896 1.23009 0.96691 0.99355 0.99825 1.21478 0.86733 0.97305 0.89832 1.44637 1.02894 1.84209 1.00462 1.19031 0.92628 1.41802 0.81558 0.90752 1.24875 0.95578 1.01852 0.98192 1.69946 0.99571 1.56058 1.31146 0.86094 0.77731 0.77316 0.84974 1.20477 1.21784 1.21822 0.88867 0.89116 0.87789 0.91427 0.92052 0.92031 0.92508 0.92051 0.92619 0.92569 0.92500 0.95997 0.91020 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.70 14.32 29.01 0.42 -2.28 16 2 C -0.14 -1.94 9.52 -36.03 -0.34 -2.28 16 3 C -0.09 -1.44 5.40 -27.88 -0.15 -1.59 16 4 C -0.12 -2.29 4.68 -26.73 -0.12 -2.41 16 5 C 0.16 3.37 3.18 -66.95 -0.21 3.16 16 6 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 7 C -0.12 -2.23 5.61 -24.89 -0.14 -2.37 16 8 C -0.15 -2.93 7.09 -24.58 -0.17 -3.10 16 9 C 0.17 4.27 5.46 -2.35 -0.01 4.25 16 10 N -0.60 -15.52 3.14 -162.31 -0.51 -16.03 16 11 C -0.22 -6.26 9.75 -15.06 -0.15 -6.41 16 12 H 0.07 2.06 7.83 -52.49 -0.41 1.64 16 13 C -0.01 -0.25 5.47 -17.43 -0.10 -0.35 16 14 N -0.92 -27.45 10.54 55.49 0.58 -26.86 16 15 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H 0.09 1.13 7.84 -52.49 -0.41 0.72 16 20 H 0.09 1.01 8.06 -52.49 -0.42 0.58 16 21 H 0.10 1.39 8.06 -52.49 -0.42 0.97 16 22 H 0.07 0.95 7.57 -51.93 -0.39 0.55 16 23 H 0.06 0.90 7.79 -51.93 -0.40 0.50 16 24 H 0.06 1.30 7.89 -51.93 -0.41 0.89 16 25 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 26 H 0.06 1.05 7.79 -51.93 -0.40 0.65 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.02 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.07 1.98 6.83 -51.92 -0.35 1.63 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 261.73 15.07 3.94 3.94 Total: -1.00 -29.77 261.73 -7.29 -37.06 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.30 Total: -2.18 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.98 Total: -13.37 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.08 Total: -42.89 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.77 -7.29 -37.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560200329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.990 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds