Wall clock time and date at job start Sun Mar 29 2020 21:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47034 * 240.00089 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00161 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.08999 * 110.36472 * 317.64906 * 12 10 9 14 14 N 1.48554 * 110.40887 * 195.17666 * 12 10 9 15 15 C 1.48566 * 104.22122 * 280.70230 * 14 12 10 16 16 C 1.54378 * 104.59213 * 320.51810 * 15 14 12 17 17 H 1.08998 * 117.60607 * 244.71699 * 16 15 14 18 18 C 1.57010 * 118.21101 * 86.26414 * 16 15 14 19 19 C 1.53003 * 59.66568 * 268.82143 * 18 16 15 20 20 H 1.08996 * 119.52305 * 247.59303 * 19 18 16 21 21 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 23 23 H 1.00901 * 111.00722 * 40.26391 * 14 12 10 24 24 H 1.09000 * 110.40684 * 201.74386 * 15 14 12 25 25 H 1.08997 * 110.40992 * 79.29975 * 15 14 12 26 26 H 1.09006 * 116.97238 * 161.28456 * 18 16 15 27 27 H 1.09002 * 118.44313 * 15.70177 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 1 0.4000 -4.8176 0.6680 14 7 2.1485 -5.9854 0.3382 15 6 2.8953 -6.2670 -0.9149 16 6 1.8440 -6.1194 -2.0357 17 1 1.5905 -7.0100 -2.6108 18 6 1.5870 -4.6885 -2.6286 19 6 0.7576 -5.1958 -1.4472 20 1 -0.3045 -5.3987 -1.5844 21 1 -0.4849 0.8400 0.0004 22 1 0.3535 -2.3907 -0.0068 23 1 2.7768 -5.7202 1.0818 24 1 3.2949 -7.2810 -0.8995 25 1 3.6987 -5.5428 -1.0494 26 1 1.0971 -4.6369 -3.6010 27 1 2.3182 -3.9050 -2.4295 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052389.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:52 Heat of formation + Delta-G solvation = -1.853380 kcal Electronic energy + Delta-G solvation = -12534.134903 eV Core-core repulsion = 10292.757612 eV Total energy + Delta-G solvation = -2241.377291 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.86214 -36.95410 -34.01490 -32.22906 -31.30173 -28.39925 -25.03038 -23.50163 -21.31683 -19.85143 -18.66913 -17.84349 -16.41984 -15.99189 -14.81297 -14.19277 -14.01431 -13.62962 -12.88038 -12.77850 -12.17553 -11.67687 -11.59481 -11.16267 -10.92673 -10.88266 -10.47528 -10.26360 -9.91755 -9.64781 -9.55668 -9.00786 -8.02724 -7.78707 -6.46180 -3.87480 3.15940 3.22862 3.27057 3.79460 3.91580 4.14018 4.68384 4.86222 5.00193 5.09021 5.27514 5.47712 5.56326 5.73616 5.97821 6.14436 6.16897 6.25405 6.39476 6.48356 6.66399 6.99934 7.49905 7.67342 7.99836 8.54548 9.11369 9.49072 9.99012 10.70475 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.062033 B = 0.009996 C = 0.009677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.264817 B = 2800.523232 C = 2892.673446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.102 0.898 9 N -0.549 5.549 10 C 0.419 3.581 11 O -0.602 6.602 12 C 0.078 3.922 13 H 0.099 0.901 14 N -0.643 5.643 15 C 0.061 3.939 16 C -0.168 4.168 17 H 0.113 0.887 18 C -0.148 4.148 19 C -0.146 4.146 20 H 0.114 0.886 21 H 0.273 0.727 22 H 0.394 0.606 23 H 0.342 0.658 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -7.368 -2.699 7.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.434 4.434 8 H 0.120 0.880 9 N -0.183 5.183 10 C 0.203 3.797 11 O -0.489 6.489 12 C -0.036 4.036 13 H 0.117 0.883 14 N -0.271 5.271 15 C -0.068 4.068 16 C -0.187 4.187 17 H 0.131 0.869 18 C -0.185 4.185 19 C -0.166 4.166 20 H 0.132 0.868 21 H 0.083 0.917 22 H 0.227 0.773 23 H 0.159 0.841 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.115 0.885 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.105 -7.769 -2.690 8.222 hybrid contribution 0.265 1.675 -0.056 1.696 sum 0.160 -6.095 -2.746 6.687 Atomic orbital electron populations 1.69607 1.05966 1.28419 1.49750 1.25289 0.95619 0.99792 0.96998 0.85920 0.78808 0.80411 0.79099 1.19871 1.20875 1.19858 1.19679 0.93350 0.82384 1.47994 0.88035 1.41916 1.09315 1.04629 1.62483 1.20593 0.88536 0.85681 0.84842 1.90493 1.13859 1.87193 1.57357 1.22016 0.96422 0.89441 0.95724 0.88338 1.64176 1.20629 1.34831 1.07483 1.22415 0.95370 1.00830 0.88213 1.24029 0.99267 0.93806 1.01597 0.86936 1.23753 1.02589 0.95748 0.96446 1.23199 0.96952 1.04749 0.91672 0.86768 0.91684 0.77268 0.84123 0.90734 0.91827 0.88467 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 13.05 55.50 0.72 -23.57 15 2 C 0.03 0.68 5.50 -17.46 -0.10 0.58 15 3 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 15 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 15 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 15 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 15 9 N -0.55 -13.94 5.29 -10.96 -0.06 -14.00 15 10 C 0.42 9.88 5.32 -10.98 -0.06 9.82 15 11 O -0.60 -15.97 14.02 5.55 0.08 -15.89 15 12 C 0.08 1.48 3.88 -67.23 -0.26 1.22 15 13 H 0.10 1.76 8.14 -51.93 -0.42 1.34 15 14 N -0.64 -11.47 7.36 -103.95 -0.77 -12.23 15 15 C 0.06 1.03 6.83 -2.18 -0.01 1.01 15 16 C -0.17 -2.65 7.29 -87.06 -0.63 -3.29 15 17 H 0.11 1.49 8.14 -51.93 -0.42 1.07 15 18 C -0.15 -2.55 9.81 -24.56 -0.24 -2.79 15 19 C -0.15 -2.48 6.78 -89.24 -0.61 -3.08 15 20 H 0.11 1.69 8.14 -51.93 -0.42 1.27 15 21 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 22 H 0.39 9.71 7.90 -40.82 -0.32 9.39 15 23 H 0.34 6.28 8.28 -39.29 -0.33 5.95 15 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.06 1.24 6.77 -51.93 -0.35 0.89 15 26 H 0.10 1.42 8.14 -51.93 -0.42 1.00 15 27 H 0.10 2.15 6.90 -51.93 -0.36 1.79 15 LS Contribution 231.72 15.07 3.49 3.49 Total: -1.00 -29.45 231.72 -6.59 -36.04 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -2.98 Total: 15.37 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -2.06 Total: -5.12 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.10 Total: -49.81 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.08 Total: -15.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.45 -6.59 -36.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052389.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.189 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds