Wall clock time and date at job start Sun Mar 29 2020 21:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47034 * 240.00089 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00161 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.08999 * 110.36472 * 317.64906 * 12 10 9 14 14 N 1.48554 * 110.40887 * 195.17666 * 12 10 9 15 15 C 1.48566 * 104.22122 * 280.70230 * 14 12 10 16 16 C 1.54378 * 104.59213 * 320.51810 * 15 14 12 17 17 H 1.08998 * 117.60607 * 244.71699 * 16 15 14 18 18 C 1.57010 * 118.21101 * 86.26414 * 16 15 14 19 19 C 1.53003 * 59.66568 * 268.82143 * 18 16 15 20 20 H 1.08996 * 119.52305 * 247.59303 * 19 18 16 21 21 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 23 23 H 1.00901 * 111.00722 * 40.26391 * 14 12 10 24 24 H 1.09000 * 110.40684 * 201.74386 * 15 14 12 25 25 H 1.08997 * 110.40992 * 79.29975 * 15 14 12 26 26 H 1.09006 * 116.97238 * 161.28456 * 18 16 15 27 27 H 1.09002 * 118.44313 * 15.70177 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 1 0.4000 -4.8176 0.6680 14 7 2.1485 -5.9854 0.3382 15 6 2.8953 -6.2670 -0.9149 16 6 1.8440 -6.1194 -2.0357 17 1 1.5905 -7.0100 -2.6108 18 6 1.5870 -4.6885 -2.6286 19 6 0.7576 -5.1958 -1.4472 20 1 -0.3045 -5.3987 -1.5844 21 1 -0.4849 0.8400 0.0004 22 1 0.3535 -2.3907 -0.0068 23 1 2.7768 -5.7202 1.0818 24 1 3.2949 -7.2810 -0.8995 25 1 3.6987 -5.5428 -1.0494 26 1 1.0971 -4.6369 -3.6010 27 1 2.3182 -3.9050 -2.4295 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052389.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:52 Heat of formation + Delta-G solvation = -24.388239 kcal Electronic energy + Delta-G solvation = -12535.112088 eV Core-core repulsion = 10292.757612 eV Total energy + Delta-G solvation = -2242.354476 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45423 -38.71797 -36.02638 -33.67132 -33.32209 -29.95407 -26.96030 -24.97062 -22.95323 -21.18734 -20.47702 -19.77852 -17.91487 -17.70102 -16.70098 -15.90508 -15.74001 -15.37693 -14.58510 -14.34731 -13.69698 -13.54065 -13.12108 -12.97308 -12.48740 -12.42132 -12.22077 -12.13944 -11.55675 -11.33595 -11.00082 -10.68320 -10.06889 -9.45612 -8.50150 -6.00270 1.35742 1.38963 1.49953 1.94898 2.26188 2.58681 3.13909 3.15306 3.27375 3.62422 3.76738 4.09379 4.24804 4.35942 4.43645 4.55729 4.85136 4.89733 4.92675 5.18353 5.31480 5.36458 5.53028 5.93327 6.16679 6.52628 7.05963 7.49451 8.02951 8.65844 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.062033 B = 0.009996 C = 0.009677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.264817 B = 2800.523232 C = 2892.673446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.339 4.339 8 H 0.077 0.923 9 N -0.558 5.558 10 C 0.421 3.579 11 O -0.636 6.636 12 C 0.078 3.922 13 H 0.115 0.885 14 N -0.632 5.632 15 C 0.054 3.946 16 C -0.147 4.147 17 H 0.152 0.848 18 C -0.162 4.162 19 C -0.151 4.151 20 H 0.145 0.855 21 H 0.279 0.721 22 H 0.396 0.604 23 H 0.337 0.663 24 H 0.106 0.894 25 H 0.029 0.971 26 H 0.125 0.875 27 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 -8.223 -3.252 8.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.095 0.905 9 N -0.193 5.193 10 C 0.207 3.793 11 O -0.524 6.524 12 C -0.036 4.036 13 H 0.132 0.868 14 N -0.260 5.260 15 C -0.075 4.075 16 C -0.165 4.165 17 H 0.170 0.830 18 C -0.200 4.200 19 C -0.171 4.171 20 H 0.163 0.837 21 H 0.089 0.911 22 H 0.230 0.770 23 H 0.153 0.847 24 H 0.124 0.876 25 H 0.047 0.953 26 H 0.143 0.857 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.003 -8.642 -3.243 9.285 hybrid contribution 0.587 1.882 0.127 1.976 sum -0.415 -6.760 -3.116 7.455 Atomic orbital electron populations 1.69665 1.06852 1.29548 1.49505 1.26057 0.96527 1.02431 0.95917 0.84997 0.77822 0.76629 0.78933 1.19746 1.19241 1.19703 1.19635 0.92637 0.84145 1.50447 0.90493 1.41949 1.09301 1.04699 1.63381 1.21532 0.88370 0.86848 0.82516 1.90468 1.15746 1.87976 1.58257 1.22112 0.96443 0.86909 0.98135 0.86770 1.64276 1.20482 1.33484 1.07719 1.22544 0.94945 1.01535 0.88465 1.24206 0.97558 0.94140 1.00632 0.83044 1.23700 1.02345 0.95857 0.98047 1.23338 0.98731 1.05212 0.89769 0.83733 0.91106 0.77002 0.84723 0.87633 0.95261 0.85669 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.43 13.05 21.67 0.28 -49.15 15 2 C -0.01 -0.47 5.50 84.93 0.47 0.00 15 3 Si 0.99 42.91 29.55 68.60 2.03 44.94 15 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 7 C -0.34 -19.38 9.68 84.04 0.81 -18.57 15 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 15 9 N -0.56 -29.04 5.29 -306.97 -1.62 -30.66 15 10 C 0.42 20.28 5.32 87.66 0.47 20.75 15 11 O -0.64 -35.00 14.02 -3.07 -0.04 -35.04 15 12 C 0.08 2.88 3.88 44.32 0.17 3.05 15 13 H 0.11 3.89 8.14 -2.39 -0.02 3.87 15 14 N -0.63 -21.68 7.36 -482.80 -3.55 -25.24 15 15 C 0.05 1.74 6.83 86.45 0.59 2.33 15 16 C -0.15 -4.20 7.29 -8.49 -0.06 -4.26 15 17 H 0.15 3.23 8.14 -2.39 -0.02 3.21 15 18 C -0.16 -5.38 9.81 32.00 0.31 -5.07 15 19 C -0.15 -4.76 6.78 -9.90 -0.07 -4.83 15 20 H 0.15 3.71 8.14 -2.39 -0.02 3.69 15 21 H 0.28 14.10 8.31 -92.71 -0.77 13.33 15 22 H 0.40 19.82 7.90 -92.71 -0.73 19.09 15 23 H 0.34 12.24 8.28 -89.69 -0.74 11.50 15 24 H 0.11 2.75 8.14 -2.39 -0.02 2.73 15 25 H 0.03 1.15 6.77 -2.39 -0.02 1.14 15 26 H 0.13 3.39 8.14 -2.38 -0.02 3.37 15 27 H 0.06 2.44 6.90 -2.39 -0.02 2.42 15 Total: -1.00 -64.24 231.72 -0.49 -64.73 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -0.28 Total: 37.02 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 2.69 Total: -6.59 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -4.89 Total: -105.05 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.04 Total: -35.04 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -64.24 -0.49 -64.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052389.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.342 kcal (2) G-P(sol) polarization free energy of solvation -64.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds