Wall clock time and date at job start Sun Mar 29 2020 21:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30508 * 125.65549 * 2 1 4 4 C 1.34122 * 109.25548 * 180.29407 * 3 2 1 5 5 C 1.34666 * 108.02502 * 359.72011 * 4 3 2 6 6 N 1.35047 * 125.64973 * 179.82238 * 2 1 3 7 7 C 1.46498 * 126.39383 * 359.97438 * 6 2 1 8 8 C 1.53000 * 109.47465 * 84.71342 * 7 6 2 9 9 H 1.09001 * 109.47194 * 54.99507 * 8 7 6 10 10 O 1.42898 * 109.46998 * 295.00173 * 8 7 6 11 11 C 1.50696 * 109.47457 * 174.99543 * 8 7 6 12 12 H 1.08003 * 120.00087 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99956 * 179.97438 * 11 8 7 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46845 * 60.00735 * 15 13 11 17 17 H 1.48503 * 109.47399 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47295 * 300.00832 * 15 13 11 19 19 H 1.08998 * 109.46879 * 270.18005 * 1 2 3 20 20 H 1.09000 * 109.46945 * 30.17227 * 1 2 3 21 21 H 1.08994 * 109.47504 * 150.17574 * 1 2 3 22 22 H 1.08007 * 125.98405 * 179.72462 * 4 3 2 23 23 H 1.08001 * 126.59023 * 179.97438 * 5 4 3 24 24 H 1.09002 * 109.47421 * 324.71014 * 7 6 2 25 25 H 1.09002 * 109.47131 * 204.70969 * 7 6 2 26 26 H 0.96705 * 113.99817 * 299.99706 * 10 8 7 27 27 H 0.97000 * 119.99806 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0065 5 6 3.5926 -0.6644 -0.0044 6 7 2.2941 -1.0974 0.0034 7 6 1.8424 -2.4910 0.0082 8 6 1.5582 -2.9401 -1.4265 9 1 2.4421 -2.7718 -2.0417 10 8 0.4620 -2.1892 -1.9523 11 6 1.2124 -4.4068 -1.4346 12 1 1.1965 -4.9630 -0.5090 13 6 0.9154 -5.0384 -2.6236 14 7 0.9342 -4.3611 -3.7507 15 14 0.4861 -6.8564 -2.6337 16 1 -0.7182 -7.0852 -1.7953 17 1 0.2103 -7.2923 -4.0262 18 1 1.6251 -7.6371 -2.0874 19 1 -0.3633 0.0032 1.0277 20 1 -0.3633 0.8884 -0.5165 21 1 -0.3634 -0.8915 -0.5111 22 1 4.4099 1.3410 -0.0123 23 1 4.4776 -1.2833 -0.0087 24 1 0.9326 -2.5761 0.6026 25 1 2.6187 -3.1230 0.4397 26 1 -0.3600 -2.2913 -1.4532 27 1 1.1575 -3.4171 -3.7456 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641012007.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:59 Heat of formation + Delta-G solvation = -3.008186 kcal Electronic energy + Delta-G solvation = -12491.812516 eV Core-core repulsion = 10250.385149 eV Total energy + Delta-G solvation = -2241.427367 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.56882 -36.65001 -33.08941 -32.38740 -31.20313 -28.53326 -26.37114 -24.64025 -21.88144 -20.78860 -19.18305 -17.69130 -16.51181 -15.57179 -14.46185 -14.40972 -13.86318 -13.69761 -13.24751 -12.81561 -12.56710 -12.33294 -12.16611 -11.66683 -11.39677 -10.89300 -10.42015 -10.22135 -9.89616 -9.52942 -9.02218 -8.65889 -8.24102 -7.83859 -6.54567 -4.42362 2.56995 3.31290 3.32558 3.40123 3.52482 3.59297 4.37438 4.96406 5.07274 5.26102 5.34111 5.57992 5.75218 5.81540 5.84780 5.92269 6.10132 6.24795 6.30688 6.80835 7.16193 7.22943 7.60337 7.78889 8.11228 8.58401 8.64165 8.81173 9.44868 10.85370 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.065372 B = 0.009609 C = 0.009210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.214137 B = 2913.284076 C = 3039.395035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.215 3.785 3 N -0.509 5.509 4 C -0.041 4.041 5 C -0.064 4.064 6 N -0.439 5.439 7 C 0.078 3.922 8 C 0.205 3.795 9 H 0.055 0.945 10 O -0.572 6.572 11 C -0.658 4.658 12 H 0.054 0.946 13 C 0.038 3.962 14 N -0.883 5.883 15 Si 1.069 2.931 16 H -0.286 1.286 17 H -0.281 1.281 18 H -0.287 1.287 19 H 0.068 0.932 20 H 0.083 0.917 21 H 0.087 0.913 22 H 0.162 0.838 23 H 0.166 0.834 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.353 0.647 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 2.958 7.394 7.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.047 4.047 3 N -0.229 5.229 4 C -0.190 4.190 5 C -0.198 4.198 6 N -0.120 5.120 7 C -0.044 4.044 8 C 0.147 3.853 9 H 0.073 0.927 10 O -0.378 6.378 11 C -0.696 4.696 12 H 0.072 0.928 13 C -0.172 4.172 14 N -0.517 5.517 15 Si 0.897 3.103 16 H -0.212 1.212 17 H -0.206 1.206 18 H -0.213 1.213 19 H 0.087 0.913 20 H 0.102 0.898 21 H 0.105 0.895 22 H 0.180 0.820 23 H 0.184 0.816 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.200 0.800 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.386 2.543 5.969 6.500 hybrid contribution 0.648 0.127 1.479 1.619 sum 1.034 2.671 7.448 7.979 Atomic orbital electron populations 1.20305 0.85597 1.04771 1.02319 1.23108 0.95584 0.81447 1.04600 1.70160 1.02150 1.28739 1.21822 1.22113 0.94775 0.92663 1.09459 1.22629 0.87561 0.96699 1.12953 1.45623 1.06086 1.08280 1.51972 1.22967 1.00911 0.77365 1.03151 1.19890 0.87548 0.91030 0.86789 0.92699 1.86622 1.21032 1.71620 1.58502 1.22277 1.56524 0.94104 0.96661 0.92805 1.25846 0.93163 1.06307 0.91883 1.70646 1.40670 1.12335 1.28016 0.83553 0.76534 0.73983 0.76248 1.21235 1.20582 1.21322 0.91330 0.89841 0.89501 0.82030 0.81617 0.89861 0.89265 0.80041 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 9.92 36.00 0.36 -0.76 15 2 C 0.22 4.13 7.58 -155.41 -1.18 2.95 15 3 N -0.51 -10.19 11.25 -10.81 -0.12 -10.31 15 4 C -0.04 -0.74 11.87 -17.82 -0.21 -0.95 15 5 C -0.06 -1.14 11.58 -16.56 -0.19 -1.33 15 6 N -0.44 -8.39 2.73 -113.90 -0.31 -8.70 15 7 C 0.08 1.49 5.34 -4.04 -0.02 1.47 15 8 C 0.21 4.83 2.67 -27.88 -0.07 4.76 15 9 H 0.06 1.46 8.01 -51.93 -0.42 1.05 15 10 O -0.57 -13.37 10.28 -35.23 -0.36 -13.74 15 11 C -0.66 -16.97 8.76 -34.44 -0.30 -17.27 15 12 H 0.05 1.34 7.74 -52.48 -0.41 0.94 15 13 C 0.04 1.04 5.40 -17.82 -0.10 0.94 15 14 N -0.88 -25.99 13.53 55.43 0.75 -25.24 15 15 Si 1.07 23.62 29.90 -169.99 -5.08 18.54 15 16 H -0.29 -6.00 7.11 56.52 0.40 -5.60 15 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 18 H -0.29 -6.05 7.11 56.52 0.40 -5.65 15 19 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 20 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 21 H 0.09 1.35 4.41 -51.93 -0.23 1.13 15 22 H 0.16 2.36 8.06 -52.48 -0.42 1.93 15 23 H 0.17 2.46 8.06 -52.49 -0.42 2.04 15 24 H 0.08 1.46 7.94 -51.93 -0.41 1.05 15 25 H 0.09 1.62 8.14 -51.93 -0.42 1.20 15 26 H 0.35 7.18 7.22 45.56 0.33 7.51 15 27 H 0.29 8.61 6.47 -40.82 -0.26 8.35 15 LS Contribution 234.45 15.07 3.53 3.53 Total: -1.00 -31.16 234.45 -5.62 -36.78 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -2.31 Total: 9.33 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.72 Total: -10.20 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.32 Total: -44.25 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.36 Total: -13.74 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.08 Total: 18.54 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.16 -5.62 -36.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641012007.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.777 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds