Wall clock time and date at job start Sun Mar 29 2020 21:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52510 * 2 1 4 4 C 1.53048 * 109.49833 * 239.91647 * 2 1 3 5 5 C 1.53039 * 109.53804 * 178.68162 * 4 2 1 6 6 C 1.53200 * 109.30911 * 61.36865 * 5 4 2 7 7 N 1.46926 * 108.77602 * 305.35856 * 6 5 4 8 8 C 1.34772 * 120.63564 * 233.58733 * 7 6 5 9 9 O 1.21688 * 120.00336 * 174.76161 * 8 7 6 10 10 C 1.46373 * 119.99641 * 354.76442 * 8 7 6 11 11 H 1.08004 * 120.00257 * 5.00811 * 10 8 7 12 12 C 1.40052 * 120.00191 * 185.00387 * 10 8 7 13 13 N 1.30681 * 119.99474 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00263 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47325 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46979 * 120.00533 * 14 12 10 17 17 H 1.48502 * 109.46910 * 239.99984 * 14 12 10 18 18 C 1.46933 * 118.73535 * 53.61570 * 7 6 5 19 19 H 1.08996 * 109.47061 * 299.91878 * 1 2 3 20 20 H 1.09000 * 109.47013 * 59.92054 * 1 2 3 21 21 H 1.09004 * 109.47216 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.45485 * 58.66645 * 4 2 1 23 23 H 1.09000 * 109.45879 * 298.70782 * 4 2 1 24 24 H 1.09000 * 109.50007 * 301.41723 * 5 4 2 25 25 H 1.08996 * 109.49525 * 181.31526 * 5 4 2 26 26 H 1.08994 * 109.58592 * 65.15214 * 6 5 4 27 27 H 1.09006 * 109.58049 * 185.57619 * 6 5 4 28 28 H 0.96996 * 119.99477 * 179.97438 * 13 12 10 29 29 H 1.08993 * 109.58628 * 66.17363 * 18 7 6 30 30 H 1.09001 * 109.58628 * 186.46037 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2484 5 6 3.5709 -0.6951 -1.2660 6 6 4.1053 -1.4268 -0.0307 7 7 3.5046 -0.8291 1.1696 8 6 4.2811 -0.3864 2.1783 9 8 3.7791 0.1923 3.1238 10 6 5.7283 -0.6017 2.1366 11 1 6.1837 -1.0422 1.2620 12 6 6.5225 -0.2362 3.2307 13 7 5.9714 0.2965 4.2891 14 14 8.3695 -0.5102 3.1771 15 1 8.7416 -1.1227 1.8765 16 1 9.0676 0.7917 3.3284 17 1 8.7677 -1.4169 4.2838 18 6 2.0413 -0.7238 1.2496 19 1 -0.3633 0.5125 0.8907 20 1 -0.3633 0.5151 -0.8893 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6582 -0.2245 -2.1389 23 1 1.6967 -1.7573 -1.2353 24 1 3.9159 0.3388 -1.2541 25 1 3.9334 -1.1898 -2.1670 26 1 3.8375 -2.4818 -0.0867 27 1 5.1896 -1.3246 0.0137 28 1 6.5214 0.5493 5.0470 29 1 1.6053 -1.7216 1.2981 30 1 1.7637 -0.1601 2.1403 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005528011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:11 Heat of formation + Delta-G solvation = -53.695683 kcal Electronic energy + Delta-G solvation = -12905.309893 eV Core-core repulsion = 10699.798983 eV Total energy + Delta-G solvation = -2205.510910 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.60779 -35.93834 -32.70473 -32.52788 -30.85911 -27.14005 -25.63200 -24.04440 -21.54701 -20.06756 -18.78420 -16.40800 -15.70402 -14.65985 -14.39604 -13.87400 -13.79869 -13.62801 -12.76845 -12.42475 -12.16793 -11.77048 -11.53775 -11.36019 -10.98855 -10.96097 -10.54651 -10.50723 -10.28780 -10.18803 -9.84119 -9.69720 -8.84305 -7.53917 -7.13961 -6.17588 -4.61986 3.13487 3.21600 3.25812 4.10601 4.56793 4.64983 5.14694 5.24549 5.33490 5.56368 5.79431 5.83314 5.91632 5.99892 6.04680 6.15454 6.18905 6.29937 6.42018 6.53591 6.60628 6.64310 6.72131 6.91935 7.48028 7.69341 8.18354 8.40874 9.04478 9.48816 10.60542 10.79442 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057374 B = 0.010337 C = 0.009048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.907662 B = 2708.065024 C = 3093.763465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.069 0.931 4 C -0.108 4.108 5 C -0.136 4.136 6 C 0.122 3.878 7 N -0.643 5.643 8 C 0.559 3.441 9 O -0.579 6.579 10 C -0.544 4.544 11 H 0.073 0.927 12 C 0.087 3.913 13 N -0.769 5.769 14 Si 0.906 3.094 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.276 1.276 18 C 0.126 3.874 19 H 0.054 0.946 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.267 0.733 29 H 0.039 0.961 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -2.674 -9.450 10.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 H 0.087 0.913 4 C -0.146 4.146 5 C -0.175 4.175 6 C -0.003 4.003 7 N -0.381 5.381 8 C 0.365 3.635 9 O -0.462 6.462 10 C -0.581 4.581 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.398 5.398 14 Si 0.731 3.269 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.202 1.202 18 C 0.002 3.998 19 H 0.073 0.927 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.476 -2.276 -8.712 10.055 hybrid contribution 0.887 -0.176 -0.156 0.918 sum -3.588 -2.452 -8.868 9.876 Atomic orbital electron populations 1.21756 0.95599 1.01350 1.01261 1.21535 0.94777 1.00343 0.96155 0.91262 1.21519 0.95925 1.00050 0.97073 1.21966 0.95602 1.01560 0.98348 1.21404 0.99550 0.94814 0.84498 1.48163 1.04185 1.66223 1.19498 1.18261 0.87325 0.77893 0.80066 1.90581 1.75271 1.45627 1.34753 1.21033 0.90517 1.43785 1.02764 0.90867 1.25746 0.99985 0.92873 0.94681 1.70036 1.36144 1.29852 1.03720 0.86339 0.83096 0.78496 0.78978 1.18746 1.20173 1.20170 1.21170 0.83142 0.98237 0.97296 0.92694 0.93154 0.92968 0.92903 0.92478 0.91888 0.92123 0.94196 0.89091 0.92194 0.94266 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.20 37.16 0.34 -1.56 16 2 C -0.11 -1.80 2.87 -90.49 -0.26 -2.06 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.11 -1.58 5.17 -26.69 -0.14 -1.72 16 5 C -0.14 -2.16 6.08 -26.61 -0.16 -2.32 16 6 C 0.12 2.35 6.31 -3.71 -0.02 2.33 16 7 N -0.64 -15.18 2.97 -174.42 -0.52 -15.70 16 8 C 0.56 16.33 7.62 -12.99 -0.10 16.23 16 9 O -0.58 -19.18 14.45 5.20 0.08 -19.10 16 10 C -0.54 -15.50 8.86 -35.63 -0.32 -15.82 16 11 H 0.07 1.90 5.69 -52.48 -0.30 1.60 16 12 C 0.09 2.44 5.50 -17.36 -0.10 2.34 16 13 N -0.77 -23.30 11.84 55.55 0.66 -22.65 16 14 Si 0.91 20.23 29.56 -169.99 -5.02 15.21 16 15 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.13 2.58 5.73 -3.70 -0.02 2.56 16 19 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.84 5.37 -51.93 -0.28 1.56 16 28 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.89 6.99 -51.93 -0.36 1.53 16 LS Contribution 245.24 15.07 3.70 3.70 Total: -1.00 -33.44 245.24 -6.19 -39.63 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.30 Total: -1.06 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.77 Total: -0.02 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.14 Total: -38.35 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.08 Total: -19.10 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -33.44 -6.19 -39.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005528011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.070 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds