Wall clock time and date at job start Sun Mar 29 2020 21:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46174 * 2 1 4 4 C 1.53041 * 109.45887 * 119.96120 * 2 1 3 5 5 C 1.53121 * 109.27518 * 179.19477 * 4 2 1 6 6 C 1.53116 * 109.16460 * 302.34805 * 5 4 2 7 7 C 1.53039 * 109.27694 * 57.65281 * 6 5 4 8 8 N 1.46842 * 109.46263 * 240.01597 * 2 1 3 9 9 C 1.46899 * 111.00041 * 54.14846 * 8 2 1 10 10 C 1.52997 * 109.47254 * 169.99637 * 9 8 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00362 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99850 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47052 * 89.99717 * 15 13 11 17 17 H 1.48495 * 109.47307 * 209.99656 * 15 13 11 18 18 H 1.48500 * 109.47143 * 330.00164 * 15 13 11 19 19 H 1.09000 * 109.47245 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47651 * 299.98340 * 1 2 3 21 21 H 1.09003 * 109.46969 * 59.98825 * 1 2 3 22 22 H 1.08994 * 109.50753 * 299.14404 * 4 2 1 23 23 H 1.09008 * 109.50235 * 59.21940 * 4 2 1 24 24 H 1.08999 * 109.51756 * 62.25537 * 5 4 2 25 25 H 1.09005 * 109.51926 * 182.44398 * 5 4 2 26 26 H 1.08992 * 109.50347 * 177.59530 * 6 5 4 27 27 H 1.09002 * 109.50322 * 297.67869 * 6 5 4 28 28 H 1.08996 * 109.46314 * 180.80217 * 7 6 5 29 29 H 1.09004 * 109.46260 * 60.83512 * 7 6 5 30 30 H 1.09002 * 109.47043 * 289.99708 * 9 8 2 31 31 H 1.09001 * 109.47354 * 49.99769 * 9 8 2 32 32 H 1.09002 * 109.47153 * 300.00004 * 10 9 8 33 33 H 1.08998 * 109.47533 * 59.99633 * 10 9 8 34 34 H 0.96994 * 119.99814 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7206 1.2502 5 6 3.5709 -0.7358 1.2358 6 6 4.0548 -1.4188 -0.0463 7 6 3.4865 -0.6779 -1.2589 8 7 2.0193 -0.6919 -1.1992 9 6 1.4374 -0.1109 -2.4165 10 6 2.1498 -0.6809 -3.6446 11 6 1.5525 -0.0854 -4.8934 12 1 0.7456 0.6286 -4.8186 13 6 2.0366 -0.4512 -6.1315 14 7 1.5156 0.0689 -7.2213 15 14 3.4336 -1.6846 -6.2609 16 1 2.8750 -3.0577 -6.3491 17 1 4.2363 -1.3976 -7.4768 18 1 4.3000 -1.5790 -5.0594 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5135 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 1.6893 -0.1979 2.1400 23 1 1.6652 -1.7443 1.2583 24 1 3.9455 0.2873 1.2673 25 1 3.9378 -1.2860 2.1023 26 1 5.1439 -1.3946 -0.0827 27 1 3.7130 -2.4538 -0.0586 28 1 3.8176 -1.1701 -2.1732 29 1 3.8403 0.3531 -1.2531 30 1 0.3765 -0.3567 -2.4651 31 1 1.5588 0.9721 -2.3961 32 1 3.2106 -0.4351 -3.5960 33 1 2.0285 -1.7639 -3.6651 34 1 1.8560 -0.1888 -8.0922 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019480207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:24 Heat of formation + Delta-G solvation = -16.814255 kcal Electronic energy + Delta-G solvation = -13045.622341 eV Core-core repulsion = 10977.543825 eV Total energy + Delta-G solvation = -2068.078516 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.00205 -34.27480 -32.68624 -32.09853 -29.45642 -26.84559 -25.05609 -23.08653 -21.14450 -20.00710 -19.19977 -16.88748 -15.31366 -14.95419 -14.42091 -14.17785 -13.88655 -13.65678 -12.92660 -12.72789 -12.50593 -11.94849 -11.70558 -11.58304 -11.33091 -11.05844 -10.77679 -10.60986 -10.33539 -10.10041 -9.99240 -9.65489 -9.60317 -9.09457 -8.51836 -7.71979 -6.03360 -4.01237 3.32731 3.39519 3.43163 4.37355 4.46569 4.97479 5.00733 5.09578 5.30979 5.36617 5.57141 5.62486 5.75340 5.79254 5.89131 6.02613 6.05609 6.09775 6.16000 6.25750 6.32353 6.32866 6.42428 6.50000 6.60969 6.80555 7.20130 7.38345 7.63297 7.74011 7.89337 8.54892 9.00987 9.59124 11.10106 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.047896 B = 0.009462 C = 0.008168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.454479 B = 2958.552581 C = 3427.123337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.080 3.920 3 H 0.033 0.967 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.117 4.117 7 C 0.049 3.951 8 N -0.538 5.538 9 C 0.070 3.930 10 C -0.015 4.015 11 C -0.520 4.520 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.904 5.904 15 Si 0.881 3.119 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.266 1.266 19 H 0.061 0.939 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -1.894 15.646 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 H 0.051 0.949 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.079 4.079 8 N -0.263 5.263 9 C -0.056 4.056 10 C -0.052 4.052 11 C -0.559 4.559 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.543 5.543 15 Si 0.709 3.291 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.191 1.191 19 H 0.081 0.919 20 H 0.071 0.929 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.977 -2.373 15.479 15.941 hybrid contribution 0.954 0.284 -0.339 1.051 sum 3.930 -2.089 15.141 15.781 Atomic orbital electron populations 1.21879 0.94670 1.02400 1.01456 1.21584 0.95263 0.95097 0.90930 0.94913 1.21620 0.95321 1.01294 0.96524 1.21576 0.96064 1.00366 0.97763 1.21612 0.99270 1.00302 0.94328 1.22177 0.88257 0.98569 0.98862 1.62086 1.06637 1.55158 1.02430 1.22128 0.99372 0.95875 0.88263 1.19724 0.95833 0.96683 0.92974 1.21089 1.19615 1.25992 0.89162 0.91110 1.25003 0.96629 0.96063 0.95711 1.69915 1.42523 1.44088 0.97787 0.86755 0.82862 0.81956 0.77560 1.20207 1.21468 1.19068 0.91942 0.92931 0.92065 0.92231 0.91276 0.92612 0.92349 0.92126 0.91328 0.89554 0.95513 0.91123 0.95797 0.96400 0.96183 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.78 37.16 0.33 -1.71 16 2 C 0.08 1.20 2.40 -67.72 -0.16 1.04 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.11 -1.38 5.37 -26.65 -0.14 -1.52 16 5 C -0.12 -1.45 6.00 -26.61 -0.16 -1.61 16 6 C -0.12 -1.60 6.09 -26.65 -0.16 -1.77 16 7 C 0.05 0.84 4.85 -3.83 -0.02 0.82 16 8 N -0.54 -9.69 4.64 -226.69 -1.05 -10.74 16 9 C 0.07 1.48 4.30 -3.83 -0.02 1.46 16 10 C -0.01 -0.36 3.29 -27.89 -0.09 -0.45 16 11 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 12 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 15 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 19 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.92 6.55 -51.93 -0.34 0.58 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.62 5.81 -51.93 -0.30 1.32 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.49 6.84 -51.93 -0.36 1.14 16 31 H 0.02 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.02 0.44 5.26 -51.93 -0.27 0.16 16 33 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 260.88 15.07 3.93 3.93 Total: -1.00 -30.30 260.88 -7.77 -38.07 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.90 Total: -3.96 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -0.86 Total: -17.28 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.28 Total: -38.19 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.30 -7.77 -38.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019480207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.259 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds