Wall clock time and date at job start Sun Mar 29 2020 22:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99744 * 2 1 4 4 H 1.48497 * 109.47233 * 269.99967 * 3 2 1 5 5 H 1.48505 * 109.47171 * 29.99738 * 3 2 1 6 6 H 1.48502 * 109.46953 * 149.99584 * 3 2 1 7 7 C 1.37873 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99951 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99992 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47122 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47172 * 179.97438 * 10 9 7 12 12 C 1.34771 * 124.17359 * 89.99722 * 11 10 9 13 13 O 1.21225 * 127.16028 * 0.06992 * 12 11 10 14 14 C 1.51585 * 105.68254 * 180.02562 * 12 11 10 15 15 N 1.47317 * 103.59313 * 359.97438 * 14 12 11 16 16 C 1.33785 * 124.17976 * 270.30611 * 11 10 9 17 17 O 1.21542 * 123.77022 * 359.97438 * 16 11 10 18 18 H 0.96994 * 119.99867 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47050 * 60.00274 * 9 7 2 20 20 H 1.09003 * 109.46796 * 300.00644 * 9 7 2 21 21 H 1.09000 * 109.47340 * 59.99955 * 10 9 7 22 22 H 1.08998 * 109.46969 * 299.99608 * 10 9 7 23 23 H 1.08998 * 110.59926 * 241.47169 * 14 12 11 24 24 H 1.09003 * 110.73128 * 118.58762 * 14 12 11 25 25 H 0.97001 * 126.68790 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 7 5.4867 -2.6364 0.0009 12 6 6.2437 -2.6364 1.1159 13 8 5.8558 -2.6376 2.2644 14 6 7.6813 -2.6357 0.6351 15 7 7.5554 -2.6360 -0.8327 16 6 6.2382 -2.6304 -1.1058 17 8 5.7819 -2.6248 -2.2323 18 1 -0.4850 0.8400 -0.0004 19 1 3.8746 -0.6800 0.8912 20 1 3.8752 -0.6802 -0.8888 21 1 3.6586 -3.1501 -0.8892 22 1 3.6580 -3.1504 0.8907 23 1 8.1999 -3.5320 0.9754 24 1 8.2016 -1.7405 0.9756 25 1 8.2810 -2.6354 -1.4765 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019802459.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:58 Heat of formation + Delta-G solvation = -74.873430 kcal Electronic energy + Delta-G solvation = -12509.673703 eV Core-core repulsion = 10101.985452 eV Total energy + Delta-G solvation = -2407.688251 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.23440 -39.59417 -37.14032 -36.66149 -34.83997 -32.24290 -28.68932 -27.27883 -23.86758 -23.37420 -21.25602 -19.30544 -18.76804 -18.00791 -17.59836 -16.44957 -16.32246 -16.17342 -15.25959 -15.07049 -14.98312 -14.84690 -14.29046 -13.65867 -13.01568 -12.76035 -12.16106 -12.03114 -11.84633 -11.56223 -11.24456 -10.84489 -10.76521 -10.35823 -8.36370 -6.42182 0.66280 1.28403 1.30390 1.31617 1.42878 1.99997 2.29745 2.36656 2.98068 3.10561 3.90031 4.30270 4.36300 4.37192 4.42763 4.61614 4.69659 5.15170 5.23509 5.50883 5.87969 6.14820 6.17633 6.45206 6.63575 7.15919 7.22712 8.79825 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.045362 B = 0.010262 C = 0.009897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.102130 B = 2727.849319 C = 2828.565121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.535 4.535 8 H 0.044 0.956 9 C -0.013 4.013 10 C 0.139 3.861 11 N -0.585 5.585 12 C 0.505 3.495 13 O -0.508 6.508 14 C 0.082 3.918 15 N -0.706 5.706 16 C 0.691 3.309 17 O -0.588 6.588 18 H 0.270 0.730 19 H 0.018 0.982 20 H 0.014 0.986 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.167 0.833 24 H 0.159 0.841 25 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.285 -3.837 1.172 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.574 4.574 8 H 0.062 0.938 9 C -0.052 4.052 10 C 0.018 3.982 11 N -0.330 5.330 12 C 0.295 3.705 13 O -0.381 6.381 14 C -0.044 4.044 15 N -0.372 5.372 16 C 0.392 3.608 17 O -0.465 6.465 18 H 0.079 0.921 19 H 0.037 0.963 20 H 0.032 0.968 21 H 0.100 0.900 22 H 0.107 0.893 23 H 0.184 0.816 24 H 0.176 0.824 25 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 19.600 -3.747 1.232 19.993 hybrid contribution -0.292 0.680 -0.358 0.822 sum 19.307 -3.067 0.874 19.569 Atomic orbital electron populations 1.70029 1.08008 1.28411 1.51729 1.25897 0.95649 1.03242 0.93769 0.85708 0.79351 0.78711 0.79190 1.19194 1.20016 1.17878 1.21184 0.90767 0.93951 1.51486 0.93756 1.19704 0.95196 0.93895 0.96362 1.21472 0.74328 0.98992 1.03430 1.46730 1.09693 1.67508 1.09059 1.21908 0.90957 0.73542 0.84063 1.90795 1.80385 1.47586 1.19289 1.22720 0.91997 1.10152 0.79547 1.45320 1.04847 1.78012 1.09016 1.16134 0.83556 0.77564 0.83558 1.90985 1.76402 1.56887 1.22246 0.92127 0.96329 0.96778 0.89979 0.89348 0.81601 0.82387 0.69687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.87 13.96 21.45 0.30 -59.57 15 2 C 0.01 0.75 5.47 84.65 0.46 1.22 15 3 Si 0.95 45.87 27.47 68.60 1.88 47.76 15 4 H -0.27 -12.50 7.11 99.48 0.71 -11.80 15 5 H -0.27 -12.76 7.11 99.48 0.71 -12.06 15 6 H -0.25 -11.72 6.54 99.48 0.65 -11.07 15 7 C -0.54 -31.91 9.66 25.60 0.25 -31.66 15 8 H 0.04 2.83 7.99 -2.91 -0.02 2.81 15 9 C -0.01 -0.67 4.37 29.85 0.13 -0.54 15 10 C 0.14 5.86 5.64 86.38 0.49 6.34 15 11 N -0.58 -19.77 2.60 -773.13 -2.01 -21.78 15 12 C 0.51 13.98 8.32 87.94 0.73 14.72 15 13 O -0.51 -17.71 17.76 -2.86 -0.05 -17.76 15 14 C 0.08 1.02 7.97 85.76 0.68 1.70 15 15 N -0.71 -11.88 6.58 -480.29 -3.16 -15.04 15 16 C 0.69 21.46 8.62 179.44 1.55 23.01 15 17 O -0.59 -23.69 17.48 -3.85 -0.07 -23.76 15 18 H 0.27 15.89 8.31 -92.71 -0.77 15.12 15 19 H 0.02 0.93 7.20 -2.39 -0.02 0.91 15 20 H 0.01 0.71 7.57 -2.39 -0.02 0.69 15 21 H 0.08 3.55 7.87 -2.39 -0.02 3.53 15 22 H 0.09 3.68 8.00 -2.39 -0.02 3.66 15 23 H 0.17 0.76 8.14 -2.39 -0.02 0.74 15 24 H 0.16 1.01 8.14 -2.39 -0.02 0.99 15 25 H 0.46 4.57 8.96 -92.71 -0.83 3.74 15 Total: -1.00 -79.60 228.84 1.51 -78.10 By element: Atomic # 1 Polarization: -3.05 SS G_CDS: 0.33 Total: -2.72 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 4.29 Total: 14.79 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -4.88 Total: -96.39 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -0.12 Total: -41.52 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.76 kcal Total: -79.60 1.51 -78.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019802459.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.223 kcal (2) G-P(sol) polarization free energy of solvation -79.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds