Wall clock time and date at job start Sun Mar 29 2020 21:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46550 * 2 1 4 4 C 1.52996 * 109.46972 * 240.00428 * 2 1 3 5 5 C 1.53002 * 109.46969 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47092 * 60.00060 * 5 4 2 7 7 C 1.53006 * 109.46974 * 300.00168 * 6 5 4 8 8 H 1.09000 * 109.46866 * 299.99774 * 7 6 5 9 9 N 1.46505 * 109.46997 * 180.02562 * 7 6 5 10 10 C 1.36939 * 119.99896 * 84.99877 * 9 7 6 11 11 H 1.07994 * 120.00045 * 359.97438 * 10 9 7 12 12 C 1.38809 * 119.99526 * 180.02562 * 10 9 7 13 13 N 1.31623 * 120.00386 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99700 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47454 * 59.99756 * 14 12 10 16 16 H 1.48501 * 109.47257 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46889 * 299.99294 * 14 12 10 18 18 C 1.52992 * 109.47106 * 120.00405 * 2 1 3 19 19 H 1.09002 * 109.47103 * 299.99915 * 18 2 1 20 20 C 1.52997 * 109.47482 * 60.00162 * 18 2 1 21 21 H 1.09002 * 109.47596 * 299.99664 * 1 2 3 22 22 H 1.08996 * 109.47407 * 60.00059 * 1 2 3 23 23 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47552 * 299.99695 * 4 2 1 25 25 H 1.09004 * 109.47298 * 59.99824 * 4 2 1 26 26 H 1.09002 * 109.47067 * 179.97438 * 5 4 2 27 27 H 1.09000 * 109.47312 * 299.99939 * 5 4 2 28 28 H 1.09000 * 109.47140 * 59.99774 * 6 5 4 29 29 H 1.09001 * 109.47375 * 179.97438 * 6 5 4 30 30 H 0.96998 * 120.00023 * 265.00087 * 9 7 6 31 31 H 0.96998 * 119.99689 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47153 * 59.99783 * 20 18 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 20 18 2 34 34 H 1.09004 * 109.47261 * 179.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5704 -0.7204 1.2489 8 1 3.9334 0.3074 1.2487 9 7 4.0598 -1.4104 2.4450 10 6 5.3013 -1.1189 2.9438 11 1 5.9199 -0.3808 2.4552 12 6 5.7651 -1.7731 4.0768 13 7 5.0114 -2.6732 4.6721 14 14 7.4585 -1.3751 4.7577 15 1 7.5195 0.0628 5.1234 16 1 7.7149 -2.2042 5.9627 17 1 8.4875 -1.6682 3.7278 18 6 2.0400 -0.7213 1.2491 19 1 1.6767 -0.2075 2.1392 20 6 1.5301 -2.1638 1.2491 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6767 -1.7489 -1.2494 25 1 1.6766 -0.2073 -2.1393 26 1 3.9333 -1.2348 -2.1394 27 1 3.9330 0.3072 -1.2498 28 1 3.7175 -2.4693 -0.0003 29 1 5.1705 -1.4416 -0.0009 30 1 3.5043 -2.0737 2.8837 31 1 5.3354 -3.1300 5.4640 32 1 1.8934 -2.6776 0.3591 33 1 0.4401 -2.1638 1.2491 34 1 1.8938 -2.6778 2.1388 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020055185.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:04 Heat of formation + Delta-G solvation = -18.386283 kcal Electronic energy + Delta-G solvation = -13264.900619 eV Core-core repulsion = 11196.753934 eV Total energy + Delta-G solvation = -2068.146685 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.06369 -34.24744 -32.12010 -31.42952 -28.92702 -26.51362 -25.23182 -23.49558 -21.38460 -20.16419 -17.97098 -17.06737 -15.22342 -14.70584 -14.38639 -13.89070 -13.56125 -13.13511 -12.77007 -12.47565 -12.12252 -11.80700 -11.51112 -11.10924 -10.99241 -10.90398 -10.75345 -10.51650 -10.26314 -10.10948 -10.00420 -9.63800 -9.45198 -9.28870 -8.77776 -6.86260 -5.70188 -2.97517 3.47414 3.51625 3.52687 4.64096 5.05143 5.11658 5.21311 5.53944 5.61129 5.72480 5.77578 5.80511 5.87329 5.97088 6.01977 6.09497 6.19817 6.23452 6.27816 6.33901 6.46768 6.51873 6.55514 6.68704 6.75335 6.91834 6.98031 7.10030 7.31386 7.75989 8.49811 9.60247 10.21062 10.55703 11.52829 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.055946 B = 0.009299 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.360339 B = 3010.321440 C = 3243.203319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.065 0.935 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.136 4.136 7 C 0.183 3.817 8 H 0.042 0.958 9 N -0.725 5.725 10 C -0.234 4.234 11 H 0.068 0.932 12 C -0.016 4.016 13 N -0.935 5.935 14 Si 0.905 3.095 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.287 1.287 18 C -0.090 4.090 19 H 0.066 0.934 20 C -0.147 4.147 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.384 0.616 31 H 0.254 0.746 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.262 3.666 -10.225 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.177 4.177 7 C 0.073 3.927 8 H 0.060 0.940 9 N -0.367 5.367 10 C -0.366 4.366 11 H 0.086 0.914 12 C -0.212 4.212 13 N -0.584 5.584 14 Si 0.737 3.263 15 H -0.214 1.214 16 H -0.218 1.218 17 H -0.214 1.214 18 C -0.109 4.109 19 H 0.084 0.916 20 C -0.204 4.204 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.090 3.724 -10.147 12.926 hybrid contribution 0.854 -0.061 0.564 1.026 sum -6.235 3.663 -9.583 12.005 Atomic orbital electron populations 1.21877 0.95981 1.01665 1.00874 1.21109 0.94741 0.99275 0.95255 0.91696 1.21602 0.96020 1.00545 0.96775 1.21534 0.95189 1.00494 0.98338 1.22271 1.00619 0.99816 0.94961 1.20200 0.90484 0.94989 0.87029 0.93957 1.42522 1.17831 1.47669 1.28633 1.19227 0.92841 1.17597 1.06918 0.91375 1.24719 0.98434 0.99425 0.98612 1.69652 1.36987 1.29385 1.22400 0.86292 0.84351 0.77440 0.78262 1.21381 1.21755 1.21392 1.21358 0.96827 0.96068 0.96645 0.91580 1.21919 0.99364 0.96779 1.02333 0.92979 0.93442 0.92497 0.91941 0.93093 0.93151 0.92681 0.92470 0.92481 0.78125 0.93585 0.92549 0.93666 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.84 37.16 0.33 -1.45 16 2 C -0.08 -1.20 2.49 -90.62 -0.23 -1.42 16 3 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.50 4.93 -26.73 -0.13 -1.63 16 5 C -0.12 -1.74 5.92 -26.73 -0.16 -1.90 16 6 C -0.14 -2.54 5.23 -26.73 -0.14 -2.68 16 7 C 0.18 3.76 2.46 -67.90 -0.17 3.59 16 8 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 9 N -0.73 -18.59 5.04 -53.40 -0.27 -18.86 16 10 C -0.23 -6.65 9.93 -15.06 -0.15 -6.80 16 11 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 12 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 13 N -0.94 -28.71 13.06 55.49 0.72 -27.99 16 14 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 18 C -0.09 -1.55 2.41 -90.60 -0.22 -1.77 16 19 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 20 C -0.15 -2.44 7.98 37.16 0.30 -2.15 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 24 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.09 6.43 -51.93 -0.33 0.76 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.38 10.36 6.07 -40.82 -0.25 10.12 16 31 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.06 0.91 4.81 -51.93 -0.25 0.66 16 33 H 0.04 0.65 6.43 -51.93 -0.33 0.32 16 34 H 0.06 1.17 6.51 -51.93 -0.34 0.83 16 LS Contribution 257.13 15.07 3.87 3.87 Total: -1.00 -29.67 257.13 -6.87 -36.55 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.52 Total: 5.41 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.66 Total: -16.78 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.46 Total: -46.84 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.67 -6.87 -36.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020055185.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.161 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds