Wall clock time and date at job start Sun Mar 29 2020 21:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46550 * 2 1 4 4 C 1.52996 * 109.46972 * 240.00428 * 2 1 3 5 5 C 1.53002 * 109.46969 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47092 * 60.00060 * 5 4 2 7 7 C 1.53006 * 109.46974 * 300.00168 * 6 5 4 8 8 H 1.09000 * 109.46866 * 299.99774 * 7 6 5 9 9 N 1.46505 * 109.46997 * 180.02562 * 7 6 5 10 10 C 1.36939 * 119.99896 * 84.99877 * 9 7 6 11 11 H 1.07994 * 120.00045 * 359.97438 * 10 9 7 12 12 C 1.38809 * 119.99526 * 180.02562 * 10 9 7 13 13 N 1.31623 * 120.00386 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99700 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47454 * 59.99756 * 14 12 10 16 16 H 1.48501 * 109.47257 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46889 * 299.99294 * 14 12 10 18 18 C 1.52992 * 109.47106 * 120.00405 * 2 1 3 19 19 H 1.09002 * 109.47103 * 299.99915 * 18 2 1 20 20 C 1.52997 * 109.47482 * 60.00162 * 18 2 1 21 21 H 1.09002 * 109.47596 * 299.99664 * 1 2 3 22 22 H 1.08996 * 109.47407 * 60.00059 * 1 2 3 23 23 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47552 * 299.99695 * 4 2 1 25 25 H 1.09004 * 109.47298 * 59.99824 * 4 2 1 26 26 H 1.09002 * 109.47067 * 179.97438 * 5 4 2 27 27 H 1.09000 * 109.47312 * 299.99939 * 5 4 2 28 28 H 1.09000 * 109.47140 * 59.99774 * 6 5 4 29 29 H 1.09001 * 109.47375 * 179.97438 * 6 5 4 30 30 H 0.96998 * 120.00023 * 265.00087 * 9 7 6 31 31 H 0.96998 * 119.99689 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47153 * 59.99783 * 20 18 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 20 18 2 34 34 H 1.09004 * 109.47261 * 179.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5704 -0.7204 1.2489 8 1 3.9334 0.3074 1.2487 9 7 4.0598 -1.4104 2.4450 10 6 5.3013 -1.1189 2.9438 11 1 5.9199 -0.3808 2.4552 12 6 5.7651 -1.7731 4.0768 13 7 5.0114 -2.6732 4.6721 14 14 7.4585 -1.3751 4.7577 15 1 7.5195 0.0628 5.1234 16 1 7.7149 -2.2042 5.9627 17 1 8.4875 -1.6682 3.7278 18 6 2.0400 -0.7213 1.2491 19 1 1.6767 -0.2075 2.1392 20 6 1.5301 -2.1638 1.2491 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6767 -1.7489 -1.2494 25 1 1.6766 -0.2073 -2.1393 26 1 3.9333 -1.2348 -2.1394 27 1 3.9330 0.3072 -1.2498 28 1 3.7175 -2.4693 -0.0003 29 1 5.1705 -1.4416 -0.0009 30 1 3.5043 -2.0737 2.8837 31 1 5.3354 -3.1300 5.4640 32 1 1.8934 -2.6776 0.3591 33 1 0.4401 -2.1638 1.2491 34 1 1.8938 -2.6778 2.1388 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020055185.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:03 Heat of formation + Delta-G solvation = -36.086037 kcal Electronic energy + Delta-G solvation = -13265.668138 eV Core-core repulsion = 11196.753934 eV Total energy + Delta-G solvation = -2068.914204 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.44530 -36.09092 -33.59083 -33.11673 -30.60876 -27.94326 -26.56000 -25.47889 -22.69332 -21.61401 -19.61439 -18.88686 -16.83986 -16.24852 -16.12220 -15.36037 -15.09902 -14.65025 -14.34939 -13.85458 -13.32844 -13.26529 -12.93469 -12.82760 -12.68131 -12.39325 -12.22724 -12.17531 -11.93975 -11.82211 -11.43872 -11.10590 -11.02848 -10.78912 -10.65788 -8.96399 -7.93342 -5.20668 1.44834 1.48127 1.54246 2.56212 3.38803 3.80059 3.86630 3.96998 4.27201 4.34962 4.42410 4.52792 4.57120 4.67011 4.73403 4.86535 4.93447 4.98870 5.11160 5.12139 5.17655 5.24616 5.29782 5.32090 5.44922 5.51596 5.56576 5.59344 5.65816 5.83669 6.30140 7.35239 8.15205 8.38257 9.30294 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.055946 B = 0.009299 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.360339 B = 3010.321440 C = 3243.203319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 H 0.065 0.935 4 C -0.108 4.108 5 C -0.111 4.111 6 C -0.128 4.128 7 C 0.175 3.825 8 H 0.030 0.970 9 N -0.739 5.739 10 C -0.239 4.239 11 H 0.071 0.929 12 C -0.079 4.079 13 N -0.971 5.971 14 Si 0.972 3.028 15 H -0.279 1.279 16 H -0.294 1.294 17 H -0.279 1.279 18 C -0.085 4.085 19 H 0.048 0.952 20 C -0.140 4.140 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.374 0.626 31 H 0.250 0.750 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.921 4.505 -12.019 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 H 0.083 0.917 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.168 4.168 7 C 0.067 3.933 8 H 0.048 0.952 9 N -0.379 5.379 10 C -0.371 4.371 11 H 0.089 0.911 12 C -0.271 4.271 13 N -0.622 5.622 14 Si 0.801 3.199 15 H -0.205 1.205 16 H -0.220 1.220 17 H -0.206 1.206 18 C -0.104 4.104 19 H 0.067 0.933 20 C -0.197 4.197 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.207 0.793 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.756 4.594 -11.987 14.998 hybrid contribution 1.036 -0.291 1.082 1.526 sum -6.720 4.304 -10.906 13.513 Atomic orbital electron populations 1.21839 0.93908 1.02279 1.01949 1.21086 0.96412 0.98778 0.93683 0.91661 1.21599 0.94484 1.01040 0.97383 1.21495 0.96557 1.00256 0.96628 1.22100 0.98967 0.99731 0.96051 1.20462 0.92965 0.93828 0.86042 0.95216 1.42752 1.17074 1.47881 1.30232 1.19597 0.93820 1.16918 1.06724 0.91148 1.25539 1.02300 0.99889 0.99358 1.69816 1.38763 1.30791 1.22854 0.85236 0.80010 0.77339 0.77347 1.20500 1.22048 1.20555 1.21283 0.94183 0.96881 0.98043 0.93308 1.21854 1.00929 0.95912 1.00997 0.93151 0.91219 0.92096 0.91636 0.90158 0.91278 0.92282 0.93161 0.95024 0.79319 0.94113 0.91881 0.91065 0.95338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.84 71.98 0.64 -2.31 16 2 C -0.08 -2.07 2.49 -10.80 -0.03 -2.09 16 3 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.11 -2.50 4.93 30.59 0.15 -2.35 16 5 C -0.11 -3.03 5.92 30.59 0.18 -2.85 16 6 C -0.13 -4.75 5.23 30.60 0.16 -4.59 16 7 C 0.18 7.26 2.46 45.01 0.11 7.38 16 8 H 0.03 1.29 8.08 -2.39 -0.02 1.28 16 9 N -0.74 -38.97 5.04 -322.86 -1.63 -40.60 16 10 C -0.24 -13.80 9.93 84.03 0.83 -12.97 16 11 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 12 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 13 N -0.97 -61.13 13.06 21.65 0.28 -60.84 16 14 Si 0.97 47.53 29.55 68.60 2.03 49.56 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 18 C -0.08 -2.87 2.41 -10.78 -0.03 -2.90 16 19 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 20 C -0.14 -4.56 7.98 71.98 0.57 -3.98 16 21 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.06 1.22 6.43 -2.39 -0.02 1.20 16 24 H 0.07 1.51 6.43 -2.39 -0.02 1.50 16 25 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.91 6.43 -2.39 -0.02 1.89 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.37 20.99 6.07 -92.71 -0.56 20.43 16 31 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.06 1.95 4.81 -2.39 -0.01 1.94 16 33 H 0.07 1.92 6.43 -2.39 -0.02 1.91 16 34 H 0.03 1.10 6.51 -2.38 -0.02 1.08 16 Total: -1.00 -64.42 257.13 4.24 -60.18 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.50 Total: 22.59 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 3.06 Total: -30.88 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -1.35 Total: -101.45 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -64.42 4.24 -60.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020055185.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.093 kcal (2) G-P(sol) polarization free energy of solvation -64.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds