Wall clock time and date at job start Sun Mar 29 2020 21:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46847 * 2 1 4 4 C 1.50701 * 109.46916 * 119.99412 * 2 1 3 5 5 H 1.07997 * 119.99527 * 120.00183 * 4 2 1 6 6 C 1.37876 * 120.00218 * 300.00559 * 4 2 1 7 7 N 1.31523 * 119.99977 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00160 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46987 * 59.99997 * 8 6 4 10 10 H 1.48504 * 109.47125 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47039 * 300.00156 * 8 6 4 12 12 N 1.46898 * 109.47558 * 239.99747 * 2 1 3 13 13 C 1.46907 * 110.99868 * 86.21305 * 12 2 1 14 14 C 1.53001 * 109.46838 * 85.98995 * 13 12 2 15 15 C 1.52995 * 109.47154 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47198 * 300.00213 * 15 14 13 17 17 C 1.52993 * 109.47148 * 59.99591 * 16 15 14 18 18 C 1.52998 * 109.46667 * 205.98666 * 13 12 2 19 19 H 1.08995 * 109.47344 * 185.63089 * 1 2 3 20 20 H 1.08999 * 109.47778 * 305.64147 * 1 2 3 21 21 H 1.09007 * 109.46655 * 65.63791 * 1 2 3 22 22 H 0.96991 * 119.99988 * 180.02562 * 7 6 4 23 23 H 1.00897 * 110.99622 * 322.26169 * 12 2 1 24 24 H 1.08994 * 109.47266 * 325.99091 * 13 12 2 25 25 H 1.09001 * 109.47405 * 59.99706 * 14 13 12 26 26 H 1.09002 * 109.47028 * 299.99946 * 14 13 12 27 27 H 1.08999 * 109.47248 * 179.97438 * 15 14 13 28 28 H 1.09001 * 109.46960 * 59.99733 * 15 14 13 29 29 H 1.09000 * 109.47207 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.46773 * 299.99634 * 16 15 14 31 31 H 1.09001 * 109.47249 * 60.00334 * 17 16 15 32 32 H 1.09005 * 109.47229 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47237 * 300.00085 * 18 13 12 34 34 H 1.08999 * 109.47231 * 60.00445 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9433 0.8304 2.6034 8 14 2.3211 -1.1201 4.0081 9 1 3.8061 -1.1206 4.0084 10 1 1.8266 -0.4196 5.2206 11 1 1.8257 -2.5199 4.0079 12 7 2.0198 -0.6925 -1.1994 13 6 2.1099 0.2293 -2.3396 14 6 3.4612 0.9462 -2.3102 15 6 3.5554 1.9059 -3.4981 16 6 3.4248 1.1171 -4.8025 17 6 2.0736 0.4002 -4.8319 18 6 1.9791 -0.5591 -3.6443 19 1 -0.3634 -1.0226 0.1008 20 1 -0.3634 0.5988 0.8351 21 1 -0.3633 0.4240 -0.9362 22 1 0.7092 1.1620 3.4843 23 1 1.4380 -1.4864 -1.4213 24 1 1.3073 0.9642 -2.2771 25 1 4.2639 0.2114 -2.3727 26 1 3.5544 1.5079 -1.3807 27 1 4.5179 2.4169 -3.4769 28 1 2.7528 2.6407 -3.4360 29 1 3.4924 1.8007 -5.6488 30 1 4.2274 0.3822 -4.8646 31 1 1.2709 1.1350 -4.7698 32 1 1.9807 -0.1622 -5.7611 33 1 2.7817 -1.2939 -3.7068 34 1 1.0164 -1.0698 -3.6652 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871073.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:41 Heat of formation + Delta-G solvation = -47.370569 kcal Electronic energy + Delta-G solvation = -13018.235248 eV Core-core repulsion = 10948.831711 eV Total energy + Delta-G solvation = -2069.403538 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.76052 -36.88448 -34.28867 -31.65164 -31.26904 -28.04879 -27.22230 -23.64267 -22.90413 -21.61147 -20.59015 -18.35413 -16.75997 -16.61190 -15.78496 -15.36651 -15.04404 -14.71293 -14.46752 -14.01620 -13.33531 -13.09890 -13.04288 -12.90004 -12.80988 -12.46258 -12.22239 -12.05692 -11.96406 -11.94025 -11.36931 -11.21856 -10.89561 -10.83457 -10.48983 -8.94088 -8.09834 -6.20867 1.42052 1.44261 1.52026 2.43743 3.18287 3.55017 3.88965 3.93844 4.23209 4.38705 4.45439 4.58412 4.66602 4.68461 4.74252 4.77793 4.85600 4.99348 5.06417 5.17864 5.22073 5.31892 5.32547 5.39563 5.47015 5.48305 5.60166 5.69131 5.84217 6.28481 6.68987 6.87949 6.96997 7.49238 8.96085 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060120 B = 0.008243 C = 0.008013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.623867 B = 3395.988817 C = 3493.374113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.218 3.782 3 H -0.002 1.002 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.687 5.687 13 C 0.087 3.913 14 C -0.102 4.102 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.113 4.113 19 H 0.032 0.968 20 H 0.058 0.942 21 H 0.023 0.977 22 H 0.261 0.739 23 H 0.330 0.670 24 H 0.015 0.985 25 H 0.060 0.940 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.469 -0.314 -12.969 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.109 3.891 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.317 5.317 13 C -0.023 4.023 14 C -0.140 4.140 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.151 4.151 19 H 0.051 0.949 20 H 0.076 0.924 21 H 0.042 0.958 22 H 0.070 0.930 23 H 0.147 0.853 24 H 0.033 0.967 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.058 -0.134 -12.656 13.021 hybrid contribution -0.867 -0.042 1.120 1.417 sum 2.191 -0.176 -11.536 11.743 Atomic orbital electron populations 1.22215 1.00139 0.99704 0.99085 1.18916 0.89803 0.92525 0.87831 0.98429 1.21456 1.30458 1.12442 0.91166 0.92783 1.25756 0.95477 0.95901 1.01973 1.70026 1.38142 1.24300 1.24021 0.85561 0.78608 0.78721 0.78407 1.19958 1.20896 1.19523 1.60711 1.56922 1.10160 1.03861 1.21521 0.96038 0.93991 0.90778 1.21462 0.97203 0.98037 0.97337 1.21530 1.01752 0.97515 0.94507 1.21516 0.97448 0.99307 0.96759 1.21496 0.97766 0.98199 0.97599 1.21665 1.01805 0.98261 0.93335 0.94924 0.92361 0.95810 0.93033 0.85256 0.96671 0.92147 0.95438 0.91124 0.92802 0.90270 0.91594 0.92473 0.89967 0.91257 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.61 8.85 71.98 0.64 -6.97 16 2 C 0.22 11.50 2.38 44.17 0.10 11.60 16 3 H 0.00 -0.13 7.19 -2.38 -0.02 -0.15 16 4 C -0.52 -29.71 8.84 25.60 0.23 -29.49 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.39 5.30 84.65 0.45 0.84 16 7 N -0.92 -54.84 11.38 21.45 0.24 -54.59 16 8 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 9 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.69 -30.17 6.05 -473.30 -2.86 -33.04 16 13 C 0.09 3.18 2.28 44.91 0.10 3.28 16 14 C -0.10 -3.60 5.42 30.59 0.17 -3.44 16 15 C -0.12 -3.07 5.92 30.59 0.18 -2.89 16 16 C -0.11 -2.41 5.92 30.59 0.18 -2.23 16 17 C -0.11 -2.50 5.92 30.58 0.18 -2.32 16 18 C -0.11 -3.15 5.18 30.58 0.16 -2.99 16 19 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 20 H 0.06 3.23 6.24 -2.39 -0.01 3.21 16 21 H 0.02 1.04 7.48 -2.38 -0.02 1.03 16 22 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 23 H 0.33 13.59 8.06 -89.70 -0.72 12.87 16 24 H 0.02 0.61 7.19 -2.39 -0.02 0.60 16 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.03 1.13 7.52 -2.39 -0.02 1.12 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 Total: -1.00 -61.59 265.51 2.12 -59.47 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.33 Total: 15.70 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 2.39 Total: -34.59 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -2.62 Total: -87.63 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -61.59 2.12 -59.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871073.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.099 kcal (2) G-P(sol) polarization free energy of solvation -61.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds