Wall clock time and date at job start Sun Mar 29 2020 21:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46506 * 2 1 4 4 C 1.53008 * 109.46723 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.46710 * 180.02562 * 4 3 2 6 6 C 1.46903 * 110.99590 * 190.00288 * 5 4 3 7 7 C 1.50697 * 109.47062 * 161.83379 * 6 5 4 8 8 H 1.08003 * 120.00185 * 354.36999 * 7 6 5 9 9 C 1.37875 * 119.99982 * 174.36084 * 7 6 5 10 10 N 1.31510 * 120.00078 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47311 * 60.00424 * 11 9 7 13 13 H 1.48504 * 109.47307 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47186 * 300.00466 * 11 9 7 15 15 C 1.46897 * 111.00263 * 66.04954 * 5 4 3 16 16 C 1.52997 * 117.50034 * 261.91095 * 15 5 4 17 17 C 1.52999 * 117.50125 * 193.24834 * 15 5 4 18 18 H 1.08994 * 109.47262 * 59.99844 * 1 2 3 19 19 H 1.09001 * 109.46723 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47255 * 299.99312 * 1 2 3 21 21 H 1.09001 * 109.47255 * 240.00688 * 2 1 3 22 22 H 1.08996 * 109.47664 * 119.99812 * 2 1 3 23 23 H 1.09003 * 109.47212 * 60.00739 * 3 2 1 24 24 H 1.08994 * 109.47487 * 300.00018 * 3 2 1 25 25 H 1.08994 * 109.47230 * 300.00269 * 4 3 2 26 26 H 1.09001 * 109.47071 * 60.00669 * 4 3 2 27 27 H 1.09002 * 109.46847 * 281.83424 * 6 5 4 28 28 H 1.08995 * 109.47379 * 41.83637 * 6 5 4 29 29 H 0.97000 * 119.99959 * 180.02562 * 10 9 7 30 30 H 1.09005 * 115.54791 * 47.57726 * 15 5 4 31 31 H 1.09000 * 117.49441 * 359.97438 * 16 15 5 32 32 H 1.08995 * 117.50263 * 145.01542 * 16 15 5 33 33 H 1.08994 * 117.49727 * 214.97908 * 17 15 5 34 34 H 1.08998 * 117.49758 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 7 4.0595 2.8277 0.0013 6 6 5.5084 2.8740 -0.2363 7 6 5.9023 4.2626 -0.6694 8 1 5.1421 5.0089 -0.8472 9 6 7.2333 4.5804 -0.8386 10 7 8.1589 3.6717 -0.6225 11 14 7.7216 6.3019 -1.3747 12 1 7.2421 7.2873 -0.3725 13 1 9.2002 6.3857 -1.4838 14 1 7.1106 6.6013 -2.6947 15 6 3.7095 3.5093 1.2546 16 6 2.4693 4.4052 1.2491 17 6 3.8656 5.0306 1.2990 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 1.8934 -0.5137 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.6766 1.9564 0.8901 24 1 1.6765 1.9564 -0.8899 25 1 3.9329 0.9290 0.8908 26 1 3.9337 0.9288 -0.8892 27 1 6.0356 2.6166 0.6823 28 1 5.7714 2.1614 -1.0180 29 1 9.0953 3.8954 -0.7411 30 1 3.9254 2.9543 2.1676 31 1 1.9134 4.4893 0.3153 32 1 1.8695 4.4401 2.1585 33 1 4.1838 5.4766 2.2412 34 1 4.2284 5.5258 0.3983 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042240492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:06 Heat of formation + Delta-G solvation = 12.931863 kcal Electronic energy + Delta-G solvation = -12786.010803 eV Core-core repulsion = 10719.222175 eV Total energy + Delta-G solvation = -2066.788628 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.85270 -34.96972 -33.30914 -32.11071 -28.74760 -26.12506 -22.70326 -22.19418 -21.55543 -20.59910 -19.30698 -16.47554 -15.34561 -14.88212 -14.61751 -14.16339 -13.78750 -13.32064 -12.58840 -12.55094 -12.09328 -11.85948 -11.26404 -11.11388 -11.01440 -10.81646 -10.73066 -10.60127 -10.49054 -10.22825 -9.81063 -9.46183 -9.05826 -9.02828 -8.35478 -7.21544 -5.96865 -3.96694 3.35985 3.39988 3.42639 4.44714 4.64746 4.81749 5.18238 5.24295 5.36865 5.38392 5.69491 5.72589 5.81786 5.90372 5.98073 6.03488 6.08109 6.22039 6.24730 6.32336 6.35638 6.44811 6.67800 6.74591 6.77830 7.07081 7.29175 7.44935 7.91286 8.18189 8.28257 8.61935 9.09449 9.65762 11.13907 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048197 B = 0.008517 C = 0.007711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.805732 B = 3286.875727 C = 3630.228354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.112 4.112 4 C 0.059 3.941 5 N -0.513 5.513 6 C 0.195 3.805 7 C -0.498 4.498 8 H 0.068 0.932 9 C 0.053 3.947 10 N -0.902 5.902 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.029 3.971 16 C -0.186 4.186 17 C -0.158 4.158 18 H 0.053 0.947 19 H 0.048 0.952 20 H 0.051 0.949 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.019 0.981 26 H 0.066 0.934 27 H -0.004 1.004 28 H 0.024 0.976 29 H 0.260 0.740 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 -3.284 2.769 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.069 4.069 5 N -0.237 5.237 6 C 0.070 3.930 7 C -0.537 4.537 8 H 0.086 0.914 9 C -0.148 4.148 10 N -0.542 5.542 11 Si 0.722 3.278 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.081 4.081 16 C -0.223 4.223 17 C -0.195 4.195 18 H 0.072 0.928 19 H 0.067 0.933 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.014 0.986 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.183 -3.066 2.371 11.835 hybrid contribution 0.895 0.389 0.431 1.067 sum -10.287 -2.677 2.802 10.993 Atomic orbital electron populations 1.21750 0.96296 1.00930 1.01676 1.21520 0.95399 0.97757 1.01598 1.21600 0.95725 0.95323 1.02393 1.22036 0.94461 0.90746 0.99661 1.61912 1.18607 1.12795 1.30400 1.19706 0.79996 0.97792 0.95511 1.21226 0.91476 0.96662 1.44303 0.91438 1.24986 0.96600 0.97218 0.95951 1.69949 1.00497 1.33623 1.50102 0.86621 0.77186 0.84733 0.79243 1.20227 1.21447 1.20246 1.22017 1.01300 0.92801 0.91956 1.23027 0.91356 1.06418 1.01549 1.23157 0.97388 0.95439 1.03492 0.92835 0.93298 0.92979 0.92246 0.92533 0.92033 0.91684 0.96307 0.91594 0.98600 0.95803 0.93004 0.91633 0.89054 0.90421 0.90329 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.73 16 3 C -0.11 -1.72 5.04 -26.72 -0.13 -1.85 16 4 C 0.06 1.11 4.95 -3.82 -0.02 1.09 16 5 N -0.51 -11.33 4.58 -228.08 -1.05 -12.37 16 6 C 0.19 5.16 4.75 -4.98 -0.02 5.13 16 7 C -0.50 -13.94 7.82 -34.44 -0.27 -14.20 16 8 H 0.07 1.86 5.55 -52.48 -0.29 1.56 16 9 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 11 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 15 C 0.03 0.58 4.19 -67.72 -0.28 0.29 16 16 C -0.19 -3.17 9.31 -26.69 -0.25 -3.42 16 17 C -0.16 -3.11 9.41 -26.69 -0.25 -3.36 16 18 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 19 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.94 6.61 -51.93 -0.34 0.60 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 26 H 0.07 1.24 7.84 -51.93 -0.41 0.83 16 27 H 0.00 -0.11 8.02 -51.93 -0.42 -0.53 16 28 H 0.02 0.67 7.76 -51.93 -0.40 0.27 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.12 2.60 5.32 -51.93 -0.28 2.33 16 LS Contribution 274.45 15.07 4.14 4.14 Total: -1.00 -29.15 274.45 -8.23 -37.38 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.92 Total: -1.66 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -1.12 Total: -17.88 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.31 Total: -38.68 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.15 -8.23 -37.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042240492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.314 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds