Wall clock time and date at job start Sun Mar 29 2020 21:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46812 * 2 1 4 4 C 1.52998 * 109.47090 * 240.00286 * 2 1 3 5 5 C 1.52995 * 109.47391 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46927 * 59.99669 * 5 4 2 7 7 C 1.52998 * 109.47356 * 300.00353 * 6 5 4 8 8 H 1.08996 * 109.47017 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.46858 * 299.99872 * 7 6 5 10 10 C 1.46504 * 120.00211 * 232.07537 * 9 7 6 11 11 C 1.36937 * 120.00304 * 52.07801 * 9 7 6 12 12 H 1.08002 * 119.99786 * 18.98307 * 11 9 7 13 13 C 1.38813 * 120.00608 * 198.97890 * 11 9 7 14 14 N 1.31619 * 119.99535 * 26.04514 * 13 11 9 15 15 Si 1.86802 * 120.00236 * 206.05097 * 13 11 9 16 16 H 1.48499 * 109.47063 * 94.99184 * 15 13 11 17 17 H 1.48498 * 109.46712 * 214.98947 * 15 13 11 18 18 H 1.48491 * 109.47217 * 334.98868 * 15 13 11 19 19 C 1.52995 * 109.47300 * 119.99838 * 2 1 3 20 20 H 1.09001 * 109.46812 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46651 * 299.99700 * 1 2 3 22 22 H 1.08995 * 109.47069 * 60.00041 * 1 2 3 23 23 H 1.09006 * 109.46935 * 59.99352 * 4 2 1 24 24 H 1.09001 * 109.47060 * 299.99563 * 4 2 1 25 25 H 1.09003 * 109.47368 * 300.00473 * 5 4 2 26 26 H 1.08995 * 109.47592 * 179.97438 * 5 4 2 27 27 H 1.08999 * 109.46960 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.47148 * 60.00436 * 6 5 4 29 29 H 1.09004 * 109.47061 * 95.09023 * 10 9 7 30 30 H 1.09002 * 109.47476 * 215.09009 * 10 9 7 31 31 H 1.09001 * 109.46967 * 335.09603 * 10 9 7 32 32 H 0.97001 * 120.00065 * 180.02562 * 14 13 11 33 33 H 1.09008 * 109.46784 * 60.00132 * 19 2 1 34 34 H 1.08997 * 109.47567 * 300.00387 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0805 -1.4416 -0.0004 7 6 3.5705 -0.7204 1.2489 8 1 3.9346 -1.2337 2.1388 9 7 4.0584 0.6610 1.2486 10 6 4.7522 1.1931 2.4241 11 6 3.8659 1.4549 0.1496 12 1 3.1122 1.1950 -0.5790 13 6 4.6393 2.5939 -0.0280 14 7 5.8394 2.6645 0.5079 15 14 3.9768 4.0263 -1.0274 16 1 3.3556 5.0205 -0.1159 17 1 5.0901 4.6663 -1.7731 18 1 2.9582 3.5308 -1.9876 19 6 2.0401 -0.7212 1.2492 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.6766 -0.2073 -2.1392 24 1 1.6768 -1.7489 -1.2493 25 1 3.9330 0.3071 -1.2498 26 1 3.9333 -1.2348 -2.1394 27 1 5.1705 -1.4408 -0.0004 28 1 3.7176 -2.4694 -0.0002 29 1 5.8288 1.0892 2.2885 30 1 4.5016 2.2466 2.5480 31 1 4.4426 0.6392 3.3104 32 1 6.3797 3.4605 0.3841 33 1 1.6767 -1.7489 1.2492 34 1 1.6768 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042240550.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:54 Heat of formation + Delta-G solvation = 34.335851 kcal Electronic energy + Delta-G solvation = -13873.318319 eV Core-core repulsion = 11807.457838 eV Total energy + Delta-G solvation = -2065.860481 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.88571 -34.14734 -31.76263 -30.97575 -28.76027 -26.04391 -25.59690 -22.86775 -20.99141 -20.20887 -18.71034 -16.53906 -14.69232 -14.39353 -14.00530 -13.49421 -13.21348 -12.90862 -12.70083 -12.00878 -11.61392 -11.47178 -11.32333 -11.02809 -10.87887 -10.71828 -10.64699 -10.35770 -10.32147 -10.00098 -9.83042 -9.27476 -9.06278 -8.36020 -8.15124 -6.64974 -5.70732 -3.02280 3.40831 3.48969 3.50141 4.54953 5.35629 5.42098 5.53701 5.69039 5.75283 6.01169 6.06881 6.24874 6.31748 6.38097 6.39364 6.51347 6.53544 6.62935 6.65008 6.72913 6.78369 6.82815 7.17733 7.18522 7.22929 7.31232 7.44617 7.66873 7.75492 7.90662 8.43152 9.26168 9.95968 10.46324 11.33972 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.016786 C = 0.014049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.493794 B = 1667.616913 C = 1992.482395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 H 0.122 0.878 4 C -0.102 4.102 5 C -0.163 4.163 6 C -0.110 4.110 7 C 0.173 3.827 8 H 0.046 0.954 9 N -0.595 5.595 10 C 0.158 3.842 11 C -0.269 4.269 12 H 0.117 0.883 13 C -0.002 4.002 14 N -0.893 5.893 15 Si 0.882 3.118 16 H -0.289 1.289 17 H -0.293 1.293 18 H -0.277 1.277 19 C -0.113 4.113 20 H 0.040 0.960 21 H 0.046 0.954 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.039 0.961 25 H 0.140 0.860 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.026 0.974 30 H 0.036 0.964 31 H 0.001 0.999 32 H 0.251 0.749 33 H 0.040 0.960 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 -5.327 -0.231 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 H 0.139 0.861 4 C -0.140 4.140 5 C -0.200 4.200 6 C -0.149 4.149 7 C 0.065 3.935 8 H 0.064 0.936 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.396 4.396 12 H 0.134 0.866 13 C -0.201 4.201 14 N -0.537 5.537 15 Si 0.712 3.288 16 H -0.216 1.216 17 H -0.220 1.220 18 H -0.202 1.202 19 C -0.153 4.153 20 H 0.059 0.941 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.157 0.843 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.169 -5.205 -0.215 8.074 hybrid contribution -0.249 0.702 -0.511 0.903 sum -6.418 -4.502 -0.726 7.873 Atomic orbital electron populations 1.21870 0.97529 1.00150 1.00572 1.21811 0.93076 1.04341 0.94503 0.86057 1.21445 0.96881 0.98546 0.97079 1.22572 0.94528 1.07342 0.95524 1.21676 0.99891 0.96496 0.96864 1.20329 0.91790 0.86199 0.95173 0.93600 1.43992 1.66767 1.07269 1.13757 1.20765 0.96091 0.96403 0.85425 1.19981 1.14348 1.02810 1.02508 0.86634 1.24916 0.95135 1.00221 0.99850 1.70185 1.07483 1.27673 1.48362 0.86560 0.78434 0.84107 0.79713 1.21629 1.22024 1.20186 1.21972 0.98167 0.97837 0.97342 0.94135 0.93466 0.93680 0.93577 0.94202 0.84309 0.95155 0.92927 0.94712 0.95537 0.94555 0.98030 0.93941 0.94166 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.19 37.16 0.34 -1.94 16 2 C -0.12 -2.24 2.35 -90.62 -0.21 -2.45 16 3 H 0.12 2.65 4.48 -51.93 -0.23 2.42 16 4 C -0.10 -1.85 4.89 -26.73 -0.13 -1.98 16 5 C -0.16 -3.31 5.54 -26.73 -0.15 -3.46 16 6 C -0.11 -2.22 5.57 -26.73 -0.15 -2.36 16 7 C 0.17 3.60 3.25 -67.91 -0.22 3.38 16 8 H 0.05 0.92 7.80 -51.93 -0.41 0.51 16 9 N -0.59 -14.49 2.86 -173.50 -0.50 -14.98 16 10 C 0.16 3.86 9.03 59.85 0.54 4.40 16 11 C -0.27 -6.89 5.29 -15.06 -0.08 -6.97 16 12 H 0.12 2.83 2.58 -52.49 -0.14 2.70 16 13 C 0.00 -0.05 4.80 -17.43 -0.08 -0.14 16 14 N -0.89 -25.71 11.31 55.49 0.63 -25.08 16 15 Si 0.88 21.29 29.63 -169.99 -5.04 16.25 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.11 -2.12 4.92 -26.71 -0.13 -2.25 16 20 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.14 3.29 3.82 -52.00 -0.20 3.09 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.70 7.45 -51.93 -0.39 0.31 16 30 H 0.04 0.94 7.40 -51.93 -0.38 0.55 16 31 H 0.00 0.02 7.89 -51.93 -0.41 -0.39 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 251.12 15.07 3.78 3.78 Total: -1.00 -27.38 251.12 -6.91 -34.29 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.52 Total: -0.48 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -0.27 Total: -13.77 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.13 Total: -40.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.04 Total: 16.25 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.38 -6.91 -34.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042240550.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.623 kcal (2) G-P(sol) polarization free energy of solvation -27.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds