Wall clock time and date at job start Sun Mar 29 2020 21:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.46872 * 2 1 4 4 C 1.46906 * 110.99762 * 164.00145 * 3 2 1 5 5 C 1.52995 * 109.47335 * 293.95162 * 4 3 2 6 6 C 1.52999 * 109.47359 * 179.97438 * 5 4 3 7 7 C 1.50691 * 109.47044 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00629 * 0.02562 * 7 6 5 9 9 C 1.37887 * 119.99924 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99512 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00041 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46700 * 90.00394 * 11 9 7 13 13 H 1.48500 * 109.46869 * 209.99944 * 11 9 7 14 14 H 1.48496 * 109.47199 * 330.00237 * 11 9 7 15 15 C 1.46899 * 110.99891 * 287.95206 * 3 2 1 16 16 C 1.52995 * 117.50104 * 244.24743 * 15 3 2 17 17 C 1.52993 * 117.49996 * 175.58639 * 15 3 2 18 18 H 1.09006 * 109.47173 * 178.25973 * 1 2 3 19 19 H 1.08994 * 109.47446 * 298.25917 * 1 2 3 20 20 H 1.09000 * 109.46854 * 58.26478 * 1 2 3 21 21 H 1.08998 * 109.46918 * 119.99385 * 2 1 3 22 22 H 1.09000 * 109.47594 * 239.99769 * 2 1 3 23 23 H 1.08996 * 109.46847 * 53.95268 * 4 3 2 24 24 H 1.09000 * 109.46536 * 173.95151 * 4 3 2 25 25 H 1.09000 * 109.47024 * 300.00337 * 5 4 3 26 26 H 1.09003 * 109.47094 * 60.00011 * 5 4 3 27 27 H 1.08996 * 109.46840 * 300.00117 * 6 5 4 28 28 H 1.09000 * 109.46519 * 59.99984 * 6 5 4 29 29 H 0.97006 * 119.99432 * 179.97438 * 10 9 7 30 30 H 1.09003 * 115.54849 * 29.92054 * 15 3 2 31 31 H 1.08997 * 117.50015 * 0.02562 * 16 15 3 32 32 H 1.09004 * 117.49749 * 145.02024 * 16 15 3 33 33 H 1.08996 * 117.50590 * 214.98520 * 17 15 3 34 34 H 1.09007 * 117.49755 * 359.97438 * 17 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4381 1.4419 0.3780 5 6 3.5960 1.0001 1.8342 6 6 5.0733 1.0588 2.2277 7 6 5.2287 0.6242 3.6622 8 1 4.3607 0.3347 4.2359 9 6 6.4793 0.5952 4.2422 10 7 7.5364 0.9473 3.5435 11 14 6.6718 0.0572 6.0207 12 1 6.8864 -1.4114 6.0730 13 1 7.8388 0.7497 6.6237 14 1 5.4434 0.4053 6.7789 15 6 1.7965 2.0222 -1.3047 16 6 3.0304 2.4384 -2.1078 17 6 2.1575 3.5029 -1.4386 18 1 -0.3634 -1.0272 -0.0312 19 1 -0.3634 0.4865 0.9051 20 1 -0.3633 0.5406 -0.8740 21 1 1.8933 -0.5137 0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 4.0130 0.7780 -0.2675 24 1 3.8030 2.4629 0.2664 25 1 3.0210 1.6641 2.4797 26 1 3.2309 -0.0209 1.9458 27 1 5.6478 0.3945 1.5822 28 1 5.4387 2.0796 2.1161 29 1 8.4162 0.9272 3.9517 30 1 0.9312 1.6628 -1.8616 31 1 4.0078 2.2391 -1.6684 32 1 2.9767 2.3531 -3.1932 33 1 1.5300 4.1177 -2.0839 34 1 2.5601 4.0044 -0.5585 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579366.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:39 Heat of formation + Delta-G solvation = -4.854410 kcal Electronic energy + Delta-G solvation = -12575.270359 eV Core-core repulsion = 10507.710461 eV Total energy + Delta-G solvation = -2067.559899 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.07731 -36.28886 -35.17364 -33.50303 -30.73117 -27.95360 -24.91841 -23.81656 -23.29818 -22.09489 -20.39424 -18.46745 -17.32257 -16.82501 -16.37365 -15.97961 -15.29831 -14.59736 -14.42704 -13.94636 -13.75409 -13.37896 -12.89718 -12.80764 -12.58020 -12.42260 -12.37190 -12.20708 -12.01203 -11.54140 -11.40966 -11.40880 -11.11932 -11.04924 -10.56251 -9.06455 -8.21555 -6.32950 1.39186 1.40984 1.52418 2.39987 2.71651 3.11472 3.14059 3.87235 4.00841 4.03993 4.11459 4.26295 4.33155 4.57604 4.62319 4.71411 4.72727 4.79776 4.91125 4.99733 5.09317 5.10675 5.14306 5.25528 5.26357 5.39594 5.49852 5.71657 5.83425 6.08560 6.24954 6.26788 6.83625 7.36417 8.90566 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.047728 B = 0.007123 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.518985 B = 3930.140721 C = 4345.747852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.042 3.958 3 N -0.516 5.516 4 C 0.067 3.933 5 C -0.090 4.090 6 C 0.027 3.973 7 C -0.545 4.545 8 H 0.059 0.941 9 C -0.001 4.001 10 N -0.934 5.934 11 Si 0.967 3.033 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.263 1.263 15 C 0.015 3.985 16 C -0.224 4.224 17 C -0.170 4.170 18 H 0.072 0.928 19 H 0.053 0.947 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.037 0.963 23 H 0.026 0.974 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.052 0.948 27 H -0.010 1.010 28 H -0.010 1.010 29 H 0.264 0.736 30 H 0.137 0.863 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.483 0.337 -9.547 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.086 4.086 3 N -0.239 5.239 4 C -0.060 4.060 5 C -0.128 4.128 6 C -0.010 4.010 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.199 4.199 10 N -0.574 5.574 11 Si 0.791 3.209 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.188 1.188 15 C -0.094 4.094 16 C -0.263 4.263 17 C -0.207 4.207 18 H 0.091 0.909 19 H 0.072 0.928 20 H 0.081 0.919 21 H 0.085 0.915 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.590 0.601 -9.168 15.586 hybrid contribution 1.224 -0.542 0.293 1.370 sum -11.366 0.059 -8.875 14.421 Atomic orbital electron populations 1.21712 0.93040 1.02229 1.02361 1.22227 0.97459 0.88067 1.00808 1.61931 1.17118 1.18031 1.26795 1.22061 0.87948 1.00183 0.95826 1.21438 0.96867 0.99997 0.94534 1.18951 0.92181 0.94766 0.95133 1.21689 0.93360 1.44736 0.98463 0.92266 1.26010 0.95591 0.95260 1.03004 1.70103 0.99172 1.49357 1.38803 0.85423 0.78005 0.78542 0.78948 1.19598 1.20579 1.18759 1.22843 0.98963 0.97197 0.90424 1.23573 0.96265 1.06040 1.00376 1.23103 1.03341 0.91803 1.02488 0.90914 0.92772 0.91851 0.91514 0.94443 0.95621 0.91718 0.93168 0.92934 0.99181 0.99153 0.92714 0.84538 0.90153 0.87075 0.86248 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 10.00 71.98 0.72 -2.14 16 2 C 0.04 1.13 5.54 86.30 0.48 1.61 16 3 N -0.52 -15.81 4.67 -871.00 -4.07 -19.88 16 4 C 0.07 2.48 3.57 86.30 0.31 2.79 16 5 C -0.09 -3.97 5.12 30.59 0.16 -3.81 16 6 C 0.03 1.50 4.97 29.85 0.15 1.65 16 7 C -0.54 -32.06 9.11 25.60 0.23 -31.82 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 10 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 11 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 15 C 0.01 0.37 5.79 44.91 0.26 0.63 16 16 C -0.22 -5.48 9.53 30.62 0.29 -5.19 16 17 C -0.17 -4.01 9.96 30.61 0.30 -3.70 16 18 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 19 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 20 H 0.06 1.17 6.74 -2.39 -0.02 1.15 16 21 H 0.07 2.03 5.94 -2.39 -0.01 2.02 16 22 H 0.04 0.97 8.05 -2.39 -0.02 0.95 16 23 H 0.03 0.97 7.58 -2.39 -0.02 0.95 16 24 H 0.06 2.45 6.20 -2.39 -0.01 2.43 16 25 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.05 2.24 6.28 -2.39 -0.01 2.22 16 27 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 29 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 30 H 0.14 2.76 6.74 -2.39 -0.02 2.75 16 31 H 0.08 2.34 5.93 -2.39 -0.01 2.33 16 32 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 2.18 7.54 -2.38 -0.02 2.16 16 Total: -1.00 -64.61 271.93 2.65 -61.96 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.05 Total: 8.17 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 3.36 Total: -39.59 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -3.78 Total: -77.64 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.61 2.65 -61.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579366.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.102 kcal (2) G-P(sol) polarization free energy of solvation -64.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds