Wall clock time and date at job start Sun Mar 29 2020 21:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46916 * 2 1 4 4 C 1.50697 * 109.47380 * 240.00131 * 2 1 3 5 5 H 1.08003 * 119.99891 * 240.00377 * 4 2 1 6 6 C 1.37876 * 120.00070 * 59.99426 * 4 2 1 7 7 N 1.31513 * 120.00100 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99831 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47296 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47046 * 120.00353 * 8 6 4 11 11 H 1.48500 * 109.47119 * 240.00102 * 8 6 4 12 12 N 1.46501 * 109.47459 * 119.99594 * 2 1 3 13 13 C 1.34781 * 120.00245 * 275.00664 * 12 2 1 14 14 O 1.21280 * 119.99805 * 359.97438 * 13 12 2 15 15 C 1.50694 * 119.99791 * 179.97438 * 13 12 2 16 16 C 1.53006 * 109.47073 * 179.97438 * 15 13 12 17 17 C 1.53000 * 117.49988 * 243.75148 * 16 15 13 18 18 C 1.52993 * 117.50097 * 175.08595 * 16 15 13 19 19 H 1.08994 * 109.46792 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46957 * 300.00131 * 1 2 3 21 21 H 1.09003 * 109.46929 * 59.99951 * 1 2 3 22 22 H 0.97000 * 120.00169 * 179.97438 * 7 6 4 23 23 H 0.97000 * 119.99528 * 94.99739 * 12 2 1 24 24 H 1.09001 * 109.47517 * 59.99904 * 15 13 12 25 25 H 1.08995 * 109.47517 * 299.99743 * 15 13 12 26 26 H 1.08998 * 115.54561 * 29.41488 * 16 15 13 27 27 H 1.09002 * 117.50034 * 359.97438 * 17 16 15 28 28 H 1.08994 * 117.49821 * 145.02184 * 17 16 15 29 29 H 1.08998 * 117.50372 * 214.98185 * 18 16 15 30 30 H 1.09001 * 117.49911 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2876 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1466 -0.1874 -4.8164 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0181 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6489 -0.7287 3.5877 16 6 2.7010 0.2547 4.7588 17 6 4.0733 0.5653 5.3599 18 6 3.0772 -0.3027 6.1331 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 0.7094 1.1617 -3.4844 23 1 2.2491 -1.6317 1.1526 24 1 3.6481 -1.1212 3.3986 25 1 1.9761 -1.5505 3.8326 26 1 1.9711 1.0634 4.7263 27 1 4.9390 0.0689 4.9214 28 1 4.2459 1.5783 5.7234 29 1 2.5950 0.1396 7.0048 30 1 3.2880 -1.3698 6.2029 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391251.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:33 Heat of formation + Delta-G solvation = -29.435213 kcal Electronic energy + Delta-G solvation = -12322.879443 eV Core-core repulsion = 10118.420546 eV Total energy + Delta-G solvation = -2204.458897 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.01391 -36.87726 -34.67957 -32.34799 -29.92725 -27.87959 -25.23225 -22.31309 -21.75130 -20.12384 -19.28387 -17.21702 -15.81949 -15.42122 -15.00331 -14.51818 -13.89512 -13.78617 -12.89065 -12.41739 -12.15511 -11.63426 -11.45412 -11.26591 -11.06069 -10.92835 -10.70155 -10.30079 -10.23059 -10.20423 -9.85210 -9.01952 -8.91930 -8.53184 -7.85631 -6.10790 -4.19948 3.24411 3.32012 3.34826 3.47585 3.87980 4.17416 4.40579 4.87274 5.04030 5.10812 5.21579 5.44160 5.65072 5.70119 5.84411 5.89858 6.03500 6.16461 6.49005 6.85513 6.99872 7.18481 7.51179 7.60266 7.72529 7.94813 8.17690 8.72443 8.81495 9.20087 9.48126 10.95312 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071360 B = 0.007234 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.282648 B = 3869.762283 C = 4035.391324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.712 5.712 13 C 0.502 3.498 14 O -0.556 6.556 15 C -0.113 4.113 16 C -0.132 4.132 17 C -0.180 4.180 18 C -0.186 4.186 19 H 0.026 0.974 20 H 0.014 0.986 21 H 0.089 0.911 22 H 0.263 0.737 23 H 0.388 0.612 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.436 -4.774 10.844 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.360 5.360 13 C 0.287 3.713 14 O -0.435 6.435 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.217 4.217 18 C -0.223 4.223 19 H 0.045 0.955 20 H 0.033 0.967 21 H 0.108 0.892 22 H 0.074 0.926 23 H 0.220 0.780 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.135 0.865 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.136 -3.804 10.700 11.781 hybrid contribution 0.418 -0.937 -0.914 1.375 sum 3.555 -4.741 9.785 11.440 Atomic orbital electron populations 1.22072 0.98545 0.99048 1.00855 1.18733 0.91003 0.94016 0.80182 0.93439 1.21272 1.32283 1.13154 0.90382 0.92058 1.24902 0.94842 0.94972 0.99088 1.69917 1.36006 1.22503 1.23736 0.86390 0.78592 0.79512 0.82578 1.19759 1.20876 1.20876 1.46532 1.65286 1.13502 1.10665 1.20387 0.78551 0.87577 0.84816 1.90630 1.51422 1.16268 1.85181 1.21252 1.02635 0.98380 0.93067 1.22068 0.99491 1.01456 0.92078 1.23012 0.93494 1.00730 1.04474 1.22991 1.04428 0.99499 0.95360 0.95516 0.96678 0.89207 0.92649 0.77990 0.89493 0.89194 0.86461 0.88980 0.88988 0.89005 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.83 2.56 -69.08 -0.18 6.66 16 3 H 0.05 1.43 7.58 -51.92 -0.39 1.03 16 4 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.25 11.32 55.43 0.63 -24.62 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.71 -15.11 5.07 -54.93 -0.28 -15.39 16 13 C 0.50 10.19 7.79 -10.99 -0.09 10.10 16 14 O -0.56 -13.61 15.23 5.56 0.08 -13.52 16 15 C -0.11 -1.64 5.98 -27.88 -0.17 -1.81 16 16 C -0.13 -1.88 5.41 -90.62 -0.49 -2.37 16 17 C -0.18 -2.19 10.18 -26.69 -0.27 -2.46 16 18 C -0.19 -2.04 10.25 -26.69 -0.27 -2.31 16 19 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 21 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.39 7.05 8.54 -40.82 -0.35 6.70 16 24 H 0.09 1.11 7.87 -51.93 -0.41 0.70 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.12 1.92 7.31 -51.93 -0.38 1.54 16 27 H 0.09 1.05 8.03 -51.93 -0.42 0.63 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 258.24 15.07 3.89 3.89 Total: -1.00 -30.67 258.24 -6.55 -37.22 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.34 Total: 5.18 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.52 Total: -8.53 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.35 Total: -40.01 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.08 Total: -13.52 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.67 -6.55 -37.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391251.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.782 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds