Wall clock time and date at job start Sun Mar 29 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99789 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47030 * 179.97438 * 11 10 9 13 13 C 1.33641 * 126.03432 * 89.99914 * 12 11 10 14 14 N 1.31785 * 114.49438 * 180.02562 * 13 12 11 15 15 C 1.29024 * 117.13149 * 359.97438 * 14 13 12 16 16 S 1.70979 * 110.16293 * 359.72847 * 15 14 13 17 17 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 18 18 H 1.08992 * 109.46894 * 60.00097 * 9 7 2 19 19 H 1.09004 * 109.47113 * 300.00248 * 9 7 2 20 20 H 1.00902 * 111.00068 * 56.04268 * 10 9 7 21 21 H 1.08996 * 109.47424 * 299.99656 * 11 10 9 22 22 H 1.09002 * 109.47411 * 60.00282 * 11 10 9 23 23 H 1.07997 * 122.75433 * 359.97438 * 13 12 11 24 24 H 1.08000 * 124.92117 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5053 -4.9070 0.0001 12 6 2.5148 -6.0260 -0.0006 13 6 3.0422 -6.6096 1.0798 14 7 3.9073 -7.5680 0.8156 15 6 4.1387 -7.8256 -0.4273 16 16 3.2022 -6.8011 -1.4258 17 1 -0.4849 0.8400 0.0004 18 1 0.6241 -2.5567 -0.8902 19 1 0.6246 -2.5571 0.8897 20 1 2.8406 -3.5487 0.7808 21 1 0.8808 -4.9812 0.8903 22 1 0.8801 -4.9818 -0.8897 23 1 2.7815 -6.3191 2.0868 24 1 4.8211 -8.5824 -0.7852 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054770385.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:10 Heat of formation + Delta-G solvation = 18.605083 kcal Electronic energy + Delta-G solvation = -9938.453818 eV Core-core repulsion = 7977.571970 eV Total energy + Delta-G solvation = -1960.881848 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 198.052 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.54543 -37.28125 -34.72993 -32.00191 -28.87617 -26.84348 -24.65642 -23.40042 -20.93650 -19.25040 -18.41823 -16.79776 -16.46463 -16.22460 -15.64512 -14.82612 -14.76250 -14.58184 -13.85030 -13.47376 -13.18644 -12.67326 -12.61364 -12.16814 -12.05358 -11.38809 -10.67250 -10.57982 -10.22815 -9.89630 -9.20400 -8.23667 -6.34946 -0.20735 0.47774 0.88689 1.41928 1.45067 1.53230 1.87686 2.40019 3.09839 3.46291 3.63606 3.98445 4.19903 4.42254 4.57809 4.79569 5.04787 5.20480 5.22761 5.58148 5.97834 6.35817 6.61952 6.74806 6.84093 7.35756 8.87469 Molecular weight = 198.05amu Principal moments of inertia in cm(-1) A = 0.075470 B = 0.006683 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.920607 B = 4188.708137 C = 4241.117245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.684 5.684 11 C 0.135 3.865 12 C -0.219 4.219 13 C 0.023 3.977 14 N -0.499 5.499 15 C 0.015 3.985 16 S 0.158 5.842 17 H 0.266 0.734 18 H 0.005 0.995 19 H -0.032 1.032 20 H 0.336 0.664 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.179 0.821 24 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 -13.051 -1.621 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.315 5.315 11 C 0.003 3.997 12 C -0.340 4.340 13 C -0.129 4.129 14 N -0.213 5.213 15 C -0.282 4.282 16 S 0.410 5.590 17 H 0.075 0.925 18 H 0.023 0.977 19 H -0.015 1.015 20 H 0.154 0.846 21 H 0.067 0.933 22 H 0.093 0.907 23 H 0.196 0.804 24 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 6.186 -13.164 -2.985 14.848 hybrid contribution -0.507 1.119 1.805 2.183 sum 5.678 -12.045 -1.181 13.368 Atomic orbital electron populations 1.70073 1.07719 1.28152 1.51260 1.25938 0.95819 1.03342 0.94515 0.85378 0.78107 0.77645 0.79117 1.19379 1.20686 1.19187 1.21485 0.93783 0.91399 1.50979 0.91870 1.19236 0.90545 0.88402 0.93732 1.60628 1.20491 1.00803 1.49616 1.20179 0.92232 0.85809 1.01440 1.25920 1.07033 1.04833 0.96264 1.21914 0.95940 0.94447 1.00553 1.66368 1.17022 1.17348 1.20587 1.28996 1.04078 1.04242 0.90850 1.83974 1.36058 1.28209 1.10720 0.92529 0.97696 1.01466 0.84636 0.93347 0.90667 0.80377 0.74979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.55 14 2 C 0.00 0.13 5.46 84.65 0.46 0.60 14 3 Si 0.97 44.05 29.54 68.60 2.03 46.08 14 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 14 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 14 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 14 7 C -0.54 -30.59 9.32 25.60 0.24 -30.35 14 8 H 0.06 3.50 7.81 -2.91 -0.02 3.48 14 9 C 0.21 11.03 5.44 85.56 0.47 11.50 14 10 N -0.68 -29.29 6.48 -521.98 -3.38 -32.67 14 11 C 0.13 4.70 6.22 85.56 0.53 5.23 14 12 C -0.22 -6.53 6.11 24.64 0.15 -6.38 14 13 C 0.02 0.66 11.25 83.66 0.94 1.60 14 14 N -0.50 -13.69 10.54 -203.74 -2.15 -15.84 14 15 C 0.02 0.33 12.23 130.66 1.60 1.93 14 16 S 0.16 3.81 23.22 -56.49 -1.31 2.50 14 17 H 0.27 14.96 8.31 -92.71 -0.77 14.19 14 18 H 0.00 0.28 8.14 -2.39 -0.02 0.26 14 19 H -0.03 -1.82 8.14 -2.38 -0.02 -1.84 14 20 H 0.34 13.87 8.71 -89.69 -0.78 13.09 14 21 H 0.05 1.64 8.14 -2.39 -0.02 1.62 14 22 H 0.07 2.64 8.14 -2.39 -0.02 2.62 14 23 H 0.18 4.61 8.06 -2.91 -0.02 4.59 14 24 H 0.23 2.90 8.06 -2.91 -0.02 2.88 14 Total: -1.00 -64.42 233.93 0.28 -64.14 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.42 Total: 7.22 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 4.39 Total: -15.88 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -5.25 Total: -104.06 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.31 Total: 2.50 kcal Total: -64.42 0.28 -64.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054770385.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.748 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds