Wall clock time and date at job start Sun Mar 29 2020 21:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47254 * 2 1 4 4 C 1.50698 * 109.47158 * 240.00028 * 2 1 3 5 5 H 1.08008 * 119.99934 * 239.99896 * 4 2 1 6 6 C 1.37881 * 120.00156 * 59.99916 * 4 2 1 7 7 N 1.31510 * 119.99956 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47190 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46944 * 119.99929 * 8 6 4 11 11 H 1.48499 * 109.46921 * 240.00056 * 8 6 4 12 12 N 1.46904 * 109.47205 * 119.99994 * 2 1 3 13 13 C 1.46900 * 110.99630 * 176.04662 * 12 2 1 14 14 C 1.46895 * 110.99840 * 300.00105 * 12 2 1 15 15 C 1.52999 * 109.47056 * 169.99835 * 14 12 2 16 16 C 1.53786 * 113.61361 * 184.99739 * 15 14 12 17 17 C 1.53781 * 87.17350 * 220.06273 * 16 15 14 18 18 C 1.53782 * 87.08260 * 25.39213 * 17 16 15 19 19 H 1.09007 * 109.46858 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.46954 * 300.00151 * 1 2 3 21 21 H 1.09004 * 109.47298 * 60.00257 * 1 2 3 22 22 H 0.97004 * 120.00079 * 179.97438 * 7 6 4 23 23 H 1.09000 * 109.46622 * 183.95139 * 13 12 2 24 24 H 1.08995 * 109.47150 * 303.94740 * 13 12 2 25 25 H 1.08999 * 109.47221 * 63.96014 * 13 12 2 26 26 H 1.09002 * 109.47616 * 49.99658 * 14 12 2 27 27 H 1.09004 * 109.47026 * 289.99734 * 14 12 2 28 28 H 1.08993 * 112.90825 * 316.24939 * 15 14 12 29 29 H 1.09002 * 113.61357 * 105.47190 * 16 15 14 30 30 H 1.09002 * 113.61608 * 334.65352 * 16 15 14 31 31 H 1.09001 * 113.61695 * 139.93969 * 17 16 15 32 32 H 1.08997 * 113.61223 * 270.84552 * 17 16 15 33 33 H 1.08997 * 113.61668 * 89.11298 * 18 17 16 34 34 H 1.08998 * 113.61674 * 219.93807 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0080 9 1 3.1455 -2.2878 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4210 15 6 1.8627 -0.9043 3.6341 16 6 1.3009 -0.3532 4.9553 17 6 2.6181 -0.7980 5.6127 18 6 3.2647 -0.6652 4.2237 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 0.7087 1.1612 -3.4845 23 1 3.8164 -1.3721 2.0500 24 1 3.8069 -1.2915 0.2719 25 1 3.9192 0.2044 1.2300 26 1 0.4722 0.1324 2.3564 27 1 2.0519 0.9346 2.5280 28 1 1.6329 -1.9566 3.4671 29 1 0.4272 -0.8948 5.3180 30 1 1.1577 0.7273 4.9520 31 1 3.0033 -0.0869 6.3434 32 1 2.5952 -1.8212 5.9875 33 1 3.6590 0.3301 4.0190 34 1 3.9774 -1.4579 3.9962 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061457930.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:47 Heat of formation + Delta-G solvation = 18.162740 kcal Electronic energy + Delta-G solvation = -13024.591901 eV Core-core repulsion = 10958.030100 eV Total energy + Delta-G solvation = -2066.561800 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.89115 -36.20886 -32.65676 -29.26501 -28.11602 -25.38358 -25.08068 -23.92943 -21.67521 -19.26273 -19.05727 -16.23665 -15.51742 -15.19535 -14.40900 -14.04129 -13.56750 -12.91826 -12.56630 -12.28720 -12.07348 -11.74582 -11.38528 -11.04653 -10.94831 -10.84827 -10.52120 -10.28950 -10.24354 -10.08550 -9.97762 -9.74479 -9.38649 -8.77837 -8.38563 -7.07297 -5.97655 -4.01743 3.31516 3.39156 3.43843 4.43530 4.82091 4.88643 4.99467 5.09612 5.31725 5.39153 5.76629 5.93296 5.93574 6.03111 6.03778 6.10641 6.26727 6.31246 6.44724 6.49974 6.58888 6.83350 6.88300 6.92723 7.11019 7.23088 7.58931 7.80831 7.87546 8.28714 8.39350 8.68795 9.05759 9.63172 11.09335 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.068858 B = 0.008263 C = 0.007667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.537345 B = 3387.753108 C = 3650.969331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.210 3.790 3 H -0.004 1.004 4 C -0.501 4.501 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.537 5.537 13 C 0.035 3.965 14 C 0.060 3.940 15 C -0.100 4.100 16 C -0.138 4.138 17 C -0.143 4.143 18 C -0.137 4.137 19 H 0.034 0.966 20 H 0.008 0.992 21 H 0.084 0.916 22 H 0.259 0.741 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.073 0.927 27 H 0.019 0.981 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 -1.823 11.302 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.104 3.896 3 H 0.013 0.987 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.261 5.261 13 C -0.113 4.113 14 C -0.069 4.069 15 C -0.119 4.119 16 C -0.176 4.176 17 C -0.181 4.181 18 C -0.174 4.174 19 H 0.053 0.947 20 H 0.027 0.973 21 H 0.102 0.898 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.025 0.975 26 H 0.091 0.909 27 H 0.037 0.963 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.884 -2.183 11.136 11.504 hybrid contribution 0.613 0.482 -0.903 1.193 sum 2.497 -1.701 10.233 10.670 Atomic orbital electron populations 1.21850 0.97839 0.99596 0.99794 1.19242 0.92282 0.91938 0.86167 0.98674 1.21229 1.30752 1.12178 0.89829 0.91810 1.24946 0.95277 0.95116 0.99031 1.69908 1.37116 1.23175 1.23213 0.86476 0.78585 0.79614 0.82949 1.19754 1.21037 1.21181 1.62129 1.09184 1.52608 1.02207 1.22296 0.88998 0.98568 1.01456 1.22109 1.00549 0.93975 0.90230 1.22582 0.95390 1.00716 0.93181 1.22919 0.96912 1.00839 0.96928 1.22811 0.97509 1.01005 0.96759 1.23075 0.97137 1.01593 0.95632 0.94717 0.97285 0.89755 0.93104 0.93323 0.90912 0.97540 0.90891 0.96335 0.88816 0.91880 0.90514 0.92118 0.90590 0.90653 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.76 37.16 0.33 -3.01 16 2 C 0.21 5.47 2.06 -68.86 -0.14 5.33 16 3 H 0.00 -0.12 8.14 -51.93 -0.42 -0.55 16 4 C -0.50 -14.04 7.88 -34.44 -0.27 -14.31 16 5 H 0.06 1.78 6.41 -52.48 -0.34 1.45 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.97 11.32 55.43 0.63 -25.35 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 N -0.54 -11.98 4.62 -236.29 -1.09 -13.07 16 13 C 0.04 0.72 8.73 60.06 0.52 1.25 16 14 C 0.06 1.13 4.69 -3.83 -0.02 1.12 16 15 C -0.10 -1.54 3.45 -89.71 -0.31 -1.85 16 16 C -0.14 -1.76 7.64 -25.92 -0.20 -1.96 16 17 C -0.14 -1.67 8.08 -25.92 -0.21 -1.88 16 18 C -0.14 -1.87 5.98 -25.82 -0.15 -2.02 16 19 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 20 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 21 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.05 0.86 5.39 -51.93 -0.28 0.58 16 24 H 0.07 1.59 6.10 -51.93 -0.32 1.28 16 25 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 26 H 0.07 1.41 5.83 -51.93 -0.30 1.11 16 27 H 0.02 0.36 7.83 -51.93 -0.41 -0.05 16 28 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.05 7.90 -51.93 -0.41 0.64 16 34 H 0.06 0.86 7.28 -51.93 -0.38 0.49 16 LS Contribution 261.77 15.07 3.94 3.94 Total: -1.00 -28.67 261.77 -7.67 -36.34 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.58 Total: -2.63 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -0.55 Total: -15.83 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.47 Total: -38.42 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.67 -7.67 -36.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061457930.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.502 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds