Wall clock time and date at job start Sun Mar 29 2020 22:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 110.65853 * 2 1 4 4 C 1.51588 * 110.68965 * 237.13921 * 2 1 3 5 5 O 1.21235 * 127.16071 * 61.51063 * 4 2 1 6 6 N 1.34776 * 105.68370 * 241.76465 * 4 2 1 7 7 C 1.33794 * 111.64325 * 359.78253 * 6 4 2 8 8 O 1.21533 * 123.77028 * 179.97438 * 7 6 4 9 9 N 1.34527 * 112.45762 * 359.97438 * 7 6 4 10 10 C 1.37144 * 126.68692 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99907 * 147.90929 * 10 9 7 12 12 C 1.38899 * 120.00582 * 327.90546 * 10 9 7 13 13 N 1.31459 * 119.99628 * 340.17560 * 12 10 9 14 14 Si 1.86802 * 120.00521 * 160.16855 * 12 10 9 15 15 H 1.48497 * 109.47044 * 270.00738 * 14 12 10 16 16 H 1.48500 * 109.46555 * 30.00363 * 14 12 10 17 17 H 1.48501 * 109.47073 * 149.99995 * 14 12 10 18 18 H 1.08995 * 109.46830 * 297.08776 * 1 2 3 19 19 H 1.09000 * 109.46342 * 57.08651 * 1 2 3 20 20 H 1.08993 * 109.47384 * 177.08420 * 1 2 3 21 21 H 1.08999 * 109.46793 * 182.91362 * 3 2 1 22 22 H 1.09001 * 109.47155 * 302.91249 * 3 2 1 23 23 H 1.08996 * 109.46933 * 62.91112 * 3 2 1 24 24 H 0.96993 * 124.17433 * 179.74189 * 6 4 2 25 25 H 0.97002 * 119.99711 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 6 2.0656 -0.7695 -1.1912 5 8 1.8932 -0.5162 -2.3642 6 7 2.7686 -1.7970 -0.6750 7 6 2.7557 -1.7811 0.6628 8 8 3.3196 -2.6067 1.3537 9 7 2.0487 -0.7490 1.1576 10 6 1.8451 -0.4553 2.4816 11 1 1.7434 0.5725 2.7973 12 6 1.7696 -1.4796 3.4167 13 7 1.5021 -2.7065 3.0275 14 14 2.0483 -1.1141 5.2273 15 1 3.4907 -1.2646 5.5464 16 1 1.6183 0.2762 5.5234 17 1 1.2572 -2.0630 6.0514 18 1 -0.3633 0.4679 0.9149 19 1 -0.3632 0.5584 -0.8628 20 1 -0.3634 -1.0262 -0.0523 21 1 3.1583 1.4094 -0.0522 22 1 1.6755 1.9686 -0.8627 23 1 1.7601 1.9366 0.9149 24 1 3.2268 -2.4657 -1.2076 25 1 1.4490 -3.4217 3.6805 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068590416.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:01 Heat of formation + Delta-G solvation = -38.890958 kcal Electronic energy + Delta-G solvation = -13199.969992 eV Core-core repulsion = 10793.842058 eV Total energy + Delta-G solvation = -2406.127934 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.21843 -37.49006 -35.32260 -33.96264 -32.35452 -30.07132 -26.89832 -25.39567 -23.26985 -21.03593 -19.60142 -17.35617 -16.76620 -15.50703 -15.12464 -14.61102 -14.50861 -13.66390 -13.44351 -13.04730 -12.52037 -12.03134 -11.76817 -11.65613 -11.39765 -11.01992 -10.91255 -10.64984 -10.32833 -9.62807 -9.20412 -9.06454 -8.72712 -7.56461 -6.25100 -3.95373 2.56027 3.23900 3.29627 3.32651 3.63056 4.10275 4.54108 4.66175 5.00448 5.18278 5.40380 5.61737 6.06966 6.15649 6.22773 6.27011 6.53266 6.67056 6.76405 6.99931 7.48284 8.08594 8.29187 8.74827 9.02022 9.35496 10.09796 10.82149 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.049635 B = 0.014621 C = 0.012735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.980769 B = 1914.534715 C = 2198.109336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.099 3.901 3 C -0.132 4.132 4 C 0.526 3.474 5 O -0.514 6.514 6 N -0.683 5.683 7 C 0.640 3.360 8 O -0.537 6.537 9 N -0.439 5.439 10 C -0.323 4.323 11 H 0.095 0.905 12 C 0.051 3.949 13 N -0.816 5.816 14 Si 0.922 3.078 15 H -0.277 1.277 16 H -0.271 1.271 17 H -0.285 1.285 18 H 0.077 0.923 19 H 0.060 0.940 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.413 0.587 25 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 5.311 -3.245 6.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.009 3.991 3 C -0.190 4.190 4 C 0.312 3.688 5 O -0.388 6.388 6 N -0.352 5.352 7 C 0.343 3.657 8 O -0.411 6.411 9 N -0.166 5.166 10 C -0.449 4.449 11 H 0.113 0.887 12 C -0.160 4.160 13 N -0.448 5.448 14 Si 0.748 3.252 15 H -0.203 1.203 16 H -0.196 1.196 17 H -0.211 1.211 18 H 0.096 0.904 19 H 0.079 0.921 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.094 0.906 24 H 0.252 0.748 25 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.925 4.911 -3.183 5.925 hybrid contribution 0.290 -0.424 0.556 0.757 sum -0.635 4.487 -2.627 5.238 Atomic orbital electron populations 1.21745 0.91617 1.02696 1.02530 1.21504 0.96641 0.94494 0.86419 1.21793 1.01070 0.93387 1.02791 1.21004 0.77082 0.81084 0.89615 1.90679 1.59636 1.71199 1.17318 1.44585 1.51241 1.29076 1.10271 1.15975 0.83837 0.86109 0.79803 1.90828 1.49421 1.41459 1.59363 1.43054 1.44709 1.25175 1.03707 1.18850 1.54549 0.93513 0.78033 0.88731 1.25307 0.95613 0.95073 1.00018 1.69974 1.38884 1.00623 1.35362 0.86046 0.78591 0.78085 0.82432 1.20297 1.19566 1.21107 0.90360 0.92075 0.92306 0.92436 0.91648 0.90602 0.74776 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.77 37.16 0.33 -2.00 15 2 C 0.10 1.99 1.11 -132.09 -0.15 1.85 15 3 C -0.13 -2.22 8.76 37.16 0.33 -1.90 15 4 C 0.53 10.78 7.48 -10.55 -0.08 10.70 15 5 O -0.51 -10.81 18.02 5.60 0.10 -10.71 15 6 N -0.68 -14.52 5.70 -15.79 -0.09 -14.61 15 7 C 0.64 16.49 8.06 -88.02 -0.71 15.78 15 8 O -0.54 -15.87 15.26 5.34 0.08 -15.78 15 9 N -0.44 -10.81 2.55 -106.78 -0.27 -11.08 15 10 C -0.32 -8.34 9.46 -14.93 -0.14 -8.48 15 11 H 0.10 2.26 7.63 -52.48 -0.40 1.86 15 12 C 0.05 1.38 4.85 -17.47 -0.08 1.29 15 13 N -0.82 -23.55 11.21 55.49 0.62 -22.93 15 14 Si 0.92 20.61 29.60 -169.99 -5.03 15.58 15 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 17 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 18 H 0.08 1.39 8.08 -51.93 -0.42 0.97 15 19 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 20 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.08 1.22 7.81 -51.93 -0.41 0.81 15 24 H 0.41 7.58 8.96 -40.82 -0.37 7.22 15 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 225.50 15.07 3.40 3.40 Total: -1.00 -31.71 225.50 -4.12 -35.83 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -2.42 Total: 3.06 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: -0.51 Total: 17.25 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.26 Total: -48.62 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.18 Total: -26.49 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -31.71 -4.12 -35.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068590416.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.062 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds