Wall clock time and date at job start Sun Mar 29 2020 22:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 110.65853 * 2 1 4 4 C 1.51588 * 110.68965 * 237.13921 * 2 1 3 5 5 O 1.21235 * 127.16071 * 61.51063 * 4 2 1 6 6 N 1.34776 * 105.68370 * 241.76465 * 4 2 1 7 7 C 1.33794 * 111.64325 * 359.78253 * 6 4 2 8 8 O 1.21533 * 123.77028 * 179.97438 * 7 6 4 9 9 N 1.34527 * 112.45762 * 359.97438 * 7 6 4 10 10 C 1.37144 * 126.68692 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99907 * 147.90929 * 10 9 7 12 12 C 1.38899 * 120.00582 * 327.90546 * 10 9 7 13 13 N 1.31459 * 119.99628 * 340.17560 * 12 10 9 14 14 Si 1.86802 * 120.00521 * 160.16855 * 12 10 9 15 15 H 1.48497 * 109.47044 * 270.00738 * 14 12 10 16 16 H 1.48500 * 109.46555 * 30.00363 * 14 12 10 17 17 H 1.48501 * 109.47073 * 149.99995 * 14 12 10 18 18 H 1.08995 * 109.46830 * 297.08776 * 1 2 3 19 19 H 1.09000 * 109.46342 * 57.08651 * 1 2 3 20 20 H 1.08993 * 109.47384 * 177.08420 * 1 2 3 21 21 H 1.08999 * 109.46793 * 182.91362 * 3 2 1 22 22 H 1.09001 * 109.47155 * 302.91249 * 3 2 1 23 23 H 1.08996 * 109.46933 * 62.91112 * 3 2 1 24 24 H 0.96993 * 124.17433 * 179.74189 * 6 4 2 25 25 H 0.97002 * 119.99711 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 6 2.0656 -0.7695 -1.1912 5 8 1.8932 -0.5162 -2.3642 6 7 2.7686 -1.7970 -0.6750 7 6 2.7557 -1.7811 0.6628 8 8 3.3196 -2.6067 1.3537 9 7 2.0487 -0.7490 1.1576 10 6 1.8451 -0.4553 2.4816 11 1 1.7434 0.5725 2.7973 12 6 1.7696 -1.4796 3.4167 13 7 1.5021 -2.7065 3.0275 14 14 2.0483 -1.1141 5.2273 15 1 3.4907 -1.2646 5.5464 16 1 1.6183 0.2762 5.5234 17 1 1.2572 -2.0630 6.0514 18 1 -0.3633 0.4679 0.9149 19 1 -0.3632 0.5584 -0.8628 20 1 -0.3634 -1.0262 -0.0523 21 1 3.1583 1.4094 -0.0522 22 1 1.6755 1.9686 -0.8627 23 1 1.7601 1.9366 0.9149 24 1 3.2268 -2.4657 -1.2076 25 1 1.4490 -3.4217 3.6805 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068590416.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:01 Heat of formation + Delta-G solvation = -62.318038 kcal Electronic energy + Delta-G solvation = -13200.985866 eV Core-core repulsion = 10793.842058 eV Total energy + Delta-G solvation = -2407.143809 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.98942 -39.29529 -37.17369 -35.81578 -34.20766 -31.89457 -28.29471 -27.32164 -24.97573 -22.95277 -21.29183 -19.20369 -18.59971 -17.27486 -16.86088 -16.49250 -16.30489 -15.46589 -15.15333 -14.88033 -14.07014 -13.62469 -13.44464 -13.11134 -13.06266 -12.70204 -12.63525 -12.34099 -12.02262 -11.36147 -11.04971 -10.99823 -10.68632 -9.54981 -8.25226 -5.98326 0.86489 1.45836 1.52828 1.60134 1.89208 2.32654 2.60061 2.88684 3.18567 3.39695 3.89074 4.08977 4.72501 4.73554 4.78181 4.85467 5.05773 5.17838 5.30598 5.34630 5.50441 6.13564 6.57533 6.78006 7.13858 7.38214 8.13998 8.82804 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.049635 B = 0.014621 C = 0.012735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.980769 B = 1914.534715 C = 2198.109336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.092 3.908 3 C -0.126 4.126 4 C 0.531 3.469 5 O -0.514 6.514 6 N -0.676 5.676 7 C 0.629 3.371 8 O -0.586 6.586 9 N -0.450 5.450 10 C -0.330 4.330 11 H 0.115 0.885 12 C -0.003 4.003 13 N -0.861 5.861 14 Si 0.988 3.012 15 H -0.288 1.288 16 H -0.243 1.243 17 H -0.287 1.287 18 H 0.082 0.918 19 H 0.094 0.906 20 H 0.036 0.964 21 H 0.052 0.948 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.424 0.576 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.540 7.349 -3.374 8.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.003 3.997 3 C -0.184 4.184 4 C 0.319 3.681 5 O -0.388 6.388 6 N -0.345 5.345 7 C 0.331 3.669 8 O -0.464 6.464 9 N -0.175 5.175 10 C -0.457 4.457 11 H 0.133 0.867 12 C -0.210 4.210 13 N -0.495 5.495 14 Si 0.812 3.188 15 H -0.215 1.215 16 H -0.166 1.166 17 H -0.213 1.213 18 H 0.101 0.899 19 H 0.113 0.887 20 H 0.055 0.945 21 H 0.072 0.928 22 H 0.113 0.887 23 H 0.104 0.896 24 H 0.265 0.735 25 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.467 7.003 -3.358 7.904 hybrid contribution 0.446 -1.016 0.489 1.213 sum -1.022 5.987 -2.869 6.717 Atomic orbital electron populations 1.21740 0.89940 1.01959 1.04331 1.21872 0.97930 0.95680 0.84171 1.21811 1.00839 0.91045 1.04715 1.21055 0.76649 0.80683 0.89747 1.90688 1.59687 1.71145 1.17311 1.44336 1.51468 1.29767 1.08939 1.16252 0.83750 0.86087 0.80769 1.90779 1.51443 1.43296 1.60854 1.43285 1.44380 1.25150 1.04732 1.19359 1.53195 0.94322 0.78805 0.86713 1.26305 0.95336 0.94854 1.04522 1.70118 1.41132 1.01745 1.36548 0.85022 0.77472 0.79231 0.77057 1.21509 1.16594 1.21267 0.89903 0.88703 0.94496 0.92844 0.88679 0.89607 0.73495 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.77 71.98 0.63 -3.49 15 2 C 0.09 3.50 1.11 2.99 0.00 3.50 15 3 C -0.13 -3.80 8.76 71.98 0.63 -3.17 15 4 C 0.53 20.84 7.48 87.94 0.66 21.49 15 5 O -0.51 -20.31 18.02 -2.89 -0.05 -20.36 15 6 N -0.68 -28.42 5.70 -441.11 -2.52 -30.94 15 7 C 0.63 32.59 8.06 179.44 1.45 34.03 15 8 O -0.59 -35.50 15.26 -3.82 -0.06 -35.56 15 9 N -0.45 -21.75 2.55 -610.17 -1.55 -23.30 15 10 C -0.33 -16.68 9.46 84.02 0.79 -15.89 15 11 H 0.12 5.19 7.63 -2.91 -0.02 5.17 15 12 C 0.00 -0.18 4.85 84.91 0.41 0.23 15 13 N -0.86 -50.69 11.21 21.66 0.24 -50.45 15 14 Si 0.99 41.97 29.60 68.60 2.03 44.00 15 15 H -0.29 -12.69 7.11 99.48 0.71 -11.98 15 16 H -0.24 -9.11 7.11 99.48 0.71 -8.40 15 17 H -0.29 -12.11 7.11 99.48 0.71 -11.40 15 18 H 0.08 2.73 8.08 -2.39 -0.02 2.71 15 19 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 20 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 21 H 0.05 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.09 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.09 2.43 7.81 -2.39 -0.02 2.41 15 24 H 0.42 15.49 8.96 -92.71 -0.83 14.65 15 25 H 0.26 14.91 8.31 -92.71 -0.77 14.14 15 Total: -1.00 -67.80 225.50 3.05 -64.75 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.38 Total: 15.15 kcal Atomic # 6 Polarization: 32.13 SS G_CDS: 4.58 Total: 36.71 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -3.83 Total: -104.69 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -0.11 Total: -55.92 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -67.80 3.05 -64.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068590416.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.436 kcal (2) G-P(sol) polarization free energy of solvation -67.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds