Wall clock time and date at job start Sun Mar 29 2020 21:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47131 * 2 1 4 4 C 1.46896 * 110.99756 * 60.89352 * 3 2 1 5 5 C 1.53006 * 109.47462 * 66.04978 * 4 3 2 6 6 C 1.50690 * 109.47427 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00420 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00088 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00080 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99814 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47163 * 90.00198 * 10 8 6 12 12 H 1.48499 * 109.46833 * 210.00039 * 10 8 6 13 13 H 1.48499 * 109.47396 * 329.99854 * 10 8 6 14 14 C 1.46900 * 110.99935 * 296.94284 * 3 2 1 15 15 C 1.52999 * 109.46871 * 288.09044 * 14 3 2 16 16 C 1.53000 * 117.49809 * 245.74046 * 15 14 3 17 17 C 1.52999 * 117.49726 * 177.11819 * 15 14 3 18 18 H 1.09000 * 109.47301 * 300.43874 * 1 2 3 19 19 H 1.08999 * 109.47539 * 60.43972 * 1 2 3 20 20 H 1.09004 * 109.46917 * 180.44063 * 1 2 3 21 21 H 1.09000 * 109.47186 * 239.99945 * 2 1 3 22 22 H 1.09001 * 109.47474 * 120.00145 * 2 1 3 23 23 H 1.09004 * 109.47223 * 186.04372 * 4 3 2 24 24 H 1.08993 * 109.47615 * 306.04769 * 4 3 2 25 25 H 1.09004 * 109.46406 * 299.99894 * 5 4 3 26 26 H 1.09002 * 109.47060 * 59.99260 * 5 4 3 27 27 H 0.97005 * 119.99849 * 180.02562 * 9 8 6 28 28 H 1.09003 * 109.46968 * 48.08863 * 14 3 2 29 29 H 1.09003 * 109.46693 * 168.09302 * 14 3 2 30 30 H 1.09003 * 115.55062 * 31.44558 * 15 14 3 31 31 H 1.09007 * 117.50049 * 359.97438 * 16 15 14 32 32 H 1.09000 * 117.50288 * 145.02160 * 16 15 14 33 33 H 1.08999 * 117.49751 * 214.97901 * 17 15 14 34 34 H 1.09001 * 117.50304 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5661 2.1036 1.1982 5 6 2.2162 1.4878 2.4389 6 6 1.7514 2.2254 3.6680 7 1 1.0618 3.0512 3.5739 8 6 2.2067 1.8462 4.9130 9 7 1.8015 2.4902 5.9857 10 14 3.3990 0.4174 5.0761 11 1 4.7925 0.9239 4.9950 12 1 3.1916 -0.2534 6.3845 13 1 3.1607 -0.5540 3.9785 14 6 1.6092 2.0885 -1.2226 15 6 2.4113 1.5552 -2.4114 16 6 3.3820 2.5183 -3.0977 17 6 2.0809 2.1171 -3.7955 18 1 -0.3634 0.5206 0.8860 19 1 -0.3634 0.5070 -0.8939 20 1 -0.3633 -1.0277 0.0079 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.8508 3.1531 1.1220 24 1 0.4820 2.0263 1.2798 25 1 1.9315 0.4384 2.5151 26 1 3.3004 1.5652 2.3574 27 1 2.1221 2.2236 6.8615 28 1 0.5462 1.9226 -1.3977 29 1 1.7964 3.1561 -1.1076 30 1 2.7015 0.5063 -2.3501 31 1 3.4490 3.5320 -2.7025 32 1 4.3112 2.1032 -3.4880 33 1 2.1540 1.4380 -4.6450 34 1 1.2918 2.8664 -3.8594 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068946998.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:55 Heat of formation + Delta-G solvation = 19.468866 kcal Electronic energy + Delta-G solvation = -12701.343632 eV Core-core repulsion = 10634.838469 eV Total energy + Delta-G solvation = -2066.505162 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.51496 -36.30848 -32.98392 -30.60690 -29.58961 -26.15456 -24.35185 -22.34708 -22.18226 -19.94871 -19.03320 -16.91001 -15.85144 -15.50356 -14.70669 -14.26979 -13.99706 -13.34543 -12.93605 -12.45861 -12.36971 -12.04771 -11.77653 -11.48877 -11.23812 -11.07821 -10.82590 -10.55931 -10.35395 -10.09548 -9.85069 -9.70252 -9.49494 -9.15783 -8.49689 -7.70699 -6.01691 -3.99377 3.35018 3.41637 3.46787 3.83529 4.41530 4.48969 4.85220 5.00760 5.13068 5.32740 5.40918 5.47324 5.60381 5.63375 5.70467 5.80757 5.83299 5.93121 6.12532 6.15017 6.18617 6.23168 6.35592 6.48484 6.63732 6.83816 7.22869 7.38419 7.66032 7.70892 7.89998 8.56422 9.02694 9.61239 11.11764 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.049339 B = 0.007724 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.364110 B = 3624.401515 C = 3694.600283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 N -0.538 5.538 4 C 0.067 3.933 5 C -0.007 4.007 6 C -0.520 4.520 7 H 0.070 0.930 8 C 0.067 3.933 9 N -0.905 5.905 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.265 1.265 14 C 0.079 3.921 15 C -0.138 4.138 16 C -0.176 4.176 17 C -0.188 4.188 18 H 0.066 0.934 19 H 0.051 0.949 20 H 0.054 0.946 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.016 0.984 26 H 0.019 0.981 27 H 0.262 0.738 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -3.531 -16.143 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.080 4.080 3 N -0.261 5.261 4 C -0.060 4.060 5 C -0.045 4.045 6 C -0.559 4.559 7 H 0.088 0.912 8 C -0.134 4.134 9 N -0.544 5.544 10 Si 0.709 3.291 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.190 1.190 14 C -0.049 4.049 15 C -0.156 4.156 16 C -0.213 4.213 17 C -0.225 4.225 18 H 0.085 0.915 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.098 0.902 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.034 0.966 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.616 -3.528 -15.927 16.325 hybrid contribution -0.265 -0.660 0.221 0.744 sum 0.351 -4.188 -15.706 16.259 Atomic orbital electron populations 1.22416 0.98812 1.01825 1.02167 1.22148 0.92638 0.91024 1.02178 1.62266 1.59608 1.02161 1.02034 1.22179 0.97478 0.97340 0.89007 1.19559 0.96338 0.96228 0.92336 1.21099 1.28059 1.17027 0.89671 0.91195 1.24994 0.96139 0.96481 0.95774 1.69919 1.44998 1.41228 0.98280 0.86750 0.81767 0.83307 0.77297 1.20260 1.21541 1.18971 1.21703 0.96289 0.97917 0.89014 1.22285 1.02231 0.99046 0.92079 1.22961 0.93701 1.00355 1.04281 1.22950 0.99693 1.04044 0.95847 0.91498 0.92983 0.92682 0.91736 0.90203 0.91791 0.95006 0.96579 0.96247 0.92778 0.94269 0.91186 0.87741 0.88872 0.89215 0.89205 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 9.28 37.15 0.34 -2.51 16 2 C 0.05 0.77 5.70 -3.83 -0.02 0.75 16 3 N -0.54 -9.44 4.67 -234.63 -1.10 -10.53 16 4 C 0.07 1.37 4.66 -3.82 -0.02 1.36 16 5 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 6 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 7 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 10 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 14 C 0.08 1.16 5.12 -3.82 -0.02 1.14 16 15 C -0.14 -1.75 5.71 -90.62 -0.52 -2.27 16 16 C -0.18 -2.01 10.18 -26.73 -0.27 -2.29 16 17 C -0.19 -1.97 10.25 -26.73 -0.27 -2.25 16 18 H 0.07 1.12 6.27 -51.93 -0.33 0.80 16 19 H 0.05 0.71 6.26 -51.93 -0.33 0.38 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.90 6.61 -51.93 -0.34 0.56 16 22 H 0.08 1.41 6.43 -51.93 -0.33 1.08 16 23 H 0.06 1.33 7.86 -51.93 -0.41 0.92 16 24 H 0.03 0.66 6.02 -51.93 -0.31 0.34 16 25 H 0.02 0.39 5.59 -51.93 -0.29 0.10 16 26 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.04 0.56 5.89 -51.93 -0.31 0.25 16 29 H 0.07 1.03 7.55 -51.93 -0.39 0.64 16 30 H 0.10 1.35 6.75 -51.93 -0.35 1.00 16 31 H 0.09 1.07 8.04 -51.93 -0.42 0.65 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 266.55 15.07 4.02 4.02 Total: -1.00 -30.26 266.55 -7.77 -38.03 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.47 Total: -1.73 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.32 Total: -19.84 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.32 Total: -38.01 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.26 -7.77 -38.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068946998.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.494 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds