Wall clock time and date at job start Sun Mar 29 2020 21:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46855 * 2 1 4 4 N 1.46494 * 109.47361 * 120.00271 * 2 1 3 5 5 C 1.36936 * 120.00339 * 114.49934 * 4 2 1 6 6 H 1.07994 * 120.00626 * 152.17920 * 5 4 2 7 7 C 1.38818 * 119.99672 * 332.17591 * 5 4 2 8 8 N 1.31615 * 120.00211 * 341.06721 * 7 5 4 9 9 Si 1.86804 * 119.99828 * 161.06107 * 7 5 4 10 10 H 1.48494 * 109.47026 * 60.00525 * 9 7 5 11 11 H 1.48496 * 109.46758 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47152 * 300.00420 * 9 7 5 13 13 C 1.46501 * 119.99995 * 294.22498 * 4 2 1 14 14 C 1.53007 * 109.47139 * 270.27360 * 13 4 2 15 15 C 1.53777 * 113.61316 * 274.13721 * 14 13 4 16 16 C 1.53953 * 87.01909 * 220.04363 * 15 14 13 17 17 C 1.53777 * 113.61602 * 176.52999 * 14 13 4 18 18 H 1.09007 * 109.46834 * 299.99648 * 1 2 3 19 19 H 1.08998 * 109.47373 * 59.99753 * 1 2 3 20 20 H 1.08997 * 109.46761 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46547 * 240.00523 * 2 1 3 22 22 H 1.09002 * 109.47073 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.47332 * 300.00272 * 3 2 1 24 24 H 1.09007 * 109.47112 * 60.00522 * 3 2 1 25 25 H 0.96994 * 120.00468 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.47128 * 30.27408 * 13 4 2 27 27 H 1.08995 * 109.47330 * 150.27575 * 13 4 2 28 28 H 1.09005 * 112.84639 * 45.33292 * 14 13 4 29 29 H 1.08995 * 113.61818 * 334.56696 * 15 14 13 30 30 H 1.09000 * 113.61280 * 105.46986 * 15 14 13 31 31 H 1.08998 * 113.54079 * 270.81648 * 16 15 14 32 32 H 1.09004 * 113.66601 * 139.92981 * 16 15 14 33 33 H 1.09001 * 113.60976 * 254.53434 * 17 14 13 34 34 H 1.09000 * 113.61348 * 25.34252 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.7103 -1.8660 1.0736 6 1 3.4347 -2.1469 1.8236 7 6 2.4805 -2.6964 -0.0148 8 7 1.3750 -2.5695 -0.7176 9 14 3.7404 -3.9941 -0.4819 10 1 3.9275 -4.9335 0.6528 11 1 3.2617 -4.7431 -1.6714 12 1 5.0337 -3.3369 -0.7989 13 6 1.7718 -0.1208 2.5230 14 6 2.9229 0.8148 2.8982 15 6 4.1148 0.0943 3.5501 16 6 4.2165 1.2974 4.5052 17 6 2.7197 1.5331 4.2427 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8901 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6767 1.9563 0.8901 25 1 1.2145 -3.1495 -1.4783 26 1 0.8373 0.4402 2.5095 27 1 1.7028 -0.9241 3.2563 28 1 3.2078 1.4825 2.0851 29 1 3.8433 -0.8366 4.0477 30 1 4.9747 -0.0133 2.8889 31 1 4.8564 2.0968 4.1318 32 1 4.4407 1.0205 5.5354 33 1 2.4548 2.5854 4.1398 34 1 2.0647 0.9970 4.9295 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083838990.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:14 Heat of formation + Delta-G solvation = 14.743061 kcal Electronic energy + Delta-G solvation = -13402.090524 eV Core-core repulsion = 11335.380435 eV Total energy + Delta-G solvation = -2066.710089 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.87254 -37.64269 -33.75592 -32.13000 -28.77703 -27.69308 -26.28954 -25.43900 -23.22450 -20.89542 -20.08304 -18.56777 -16.76444 -16.24159 -15.83915 -15.54924 -15.27385 -14.30319 -13.84475 -13.51488 -13.39317 -13.19014 -12.89731 -12.82817 -12.73274 -12.60742 -12.27831 -12.02446 -11.75747 -11.56959 -11.27862 -11.24229 -10.84870 -10.79733 -10.31413 -8.49876 -7.77260 -5.19773 1.47006 1.49385 1.55254 2.56198 3.34586 3.66235 3.95130 4.04747 4.06721 4.23741 4.53511 4.74651 4.77365 4.83884 4.93294 4.97431 4.99563 5.01956 5.08846 5.14426 5.18528 5.19318 5.27539 5.40928 5.42873 5.59861 5.71574 5.82495 5.85869 6.07786 6.52131 7.29239 8.03695 8.49879 9.26605 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.032143 B = 0.013523 C = 0.010497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.907889 B = 2070.050633 C = 2666.793271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.178 3.822 3 C -0.148 4.148 4 N -0.599 5.599 5 C -0.252 4.252 6 H 0.059 0.941 7 C -0.048 4.048 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.280 1.280 11 H -0.296 1.296 12 H -0.284 1.284 13 C 0.159 3.841 14 C -0.130 4.130 15 C -0.133 4.133 16 C -0.129 4.129 17 C -0.129 4.129 18 H 0.035 0.965 19 H 0.043 0.957 20 H 0.039 0.961 21 H 0.055 0.945 22 H 0.038 0.962 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.245 0.755 26 H 0.039 0.961 27 H 0.029 0.971 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.422 8.176 6.386 10.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.072 3.928 3 C -0.207 4.207 4 N -0.320 5.320 5 C -0.382 4.382 6 H 0.076 0.924 7 C -0.243 4.243 8 N -0.567 5.567 9 Si 0.782 3.218 10 H -0.206 1.206 11 H -0.222 1.222 12 H -0.211 1.211 13 C 0.033 3.967 14 C -0.151 4.151 15 C -0.171 4.171 16 C -0.166 4.166 17 C -0.167 4.167 18 H 0.054 0.946 19 H 0.062 0.938 20 H 0.058 0.942 21 H 0.073 0.927 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.356 8.068 6.256 10.477 hybrid contribution 0.480 -1.113 -0.610 1.357 sum 2.836 6.955 5.646 9.396 Atomic orbital electron populations 1.21950 0.98331 1.00360 0.98547 1.20186 0.92137 0.90128 0.90395 1.22272 0.99893 0.97628 1.00908 1.44109 1.64449 1.22757 1.00682 1.19323 1.14053 0.96880 1.07967 0.92352 1.25606 0.97900 0.99640 1.01192 1.70179 1.24007 1.41216 1.21254 0.85562 0.79578 0.79469 0.77149 1.20620 1.22220 1.21066 1.20814 0.95133 0.94273 0.86467 1.23254 0.97120 0.97986 0.96693 1.22835 0.98279 0.97548 0.98408 1.22801 0.96754 0.97708 0.99384 1.22866 0.96785 1.00462 0.96588 0.94602 0.93848 0.94155 0.92705 0.94282 0.92575 0.92600 0.94533 0.94257 0.95226 0.90104 0.91777 0.93675 0.89825 0.90700 0.90814 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 9.05 71.98 0.65 -5.28 16 2 C 0.18 8.40 2.38 44.99 0.11 8.51 16 3 C -0.15 -5.66 7.88 71.98 0.57 -5.09 16 4 N -0.60 -29.57 2.42 -678.03 -1.64 -31.21 16 5 C -0.25 -13.82 9.58 84.04 0.81 -13.01 16 6 H 0.06 3.19 7.90 -2.91 -0.02 3.17 16 7 C -0.05 -2.67 4.84 84.86 0.41 -2.26 16 8 N -0.92 -53.63 10.04 21.65 0.22 -53.41 16 9 Si 0.95 45.59 29.59 68.60 2.03 47.62 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 C 0.16 6.59 4.76 86.38 0.41 7.00 16 14 C -0.13 -4.48 3.43 -10.27 -0.04 -4.52 16 15 C -0.13 -4.44 7.65 31.18 0.24 -4.20 16 16 C -0.13 -3.28 8.09 31.18 0.25 -3.03 16 17 C -0.13 -3.44 7.65 31.12 0.24 -3.20 16 18 H 0.03 1.45 6.90 -2.38 -0.02 1.43 16 19 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.04 2.07 7.07 -2.39 -0.02 2.05 16 21 H 0.05 3.02 5.95 -2.39 -0.01 3.00 16 22 H 0.04 1.51 7.65 -2.39 -0.02 1.49 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.06 1.95 6.65 -2.38 -0.02 1.94 16 25 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 26 H 0.04 1.56 6.72 -2.39 -0.02 1.55 16 27 H 0.03 1.28 7.77 -2.39 -0.02 1.26 16 28 H 0.08 2.91 5.60 -2.38 -0.01 2.89 16 29 H 0.06 2.24 7.92 -2.39 -0.02 2.23 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 Total: -1.00 -59.17 264.07 5.29 -53.87 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.04 Total: 8.21 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 3.65 Total: -25.08 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -1.42 Total: -84.62 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -59.17 5.29 -53.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083838990.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.615 kcal (2) G-P(sol) polarization free energy of solvation -59.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds