Wall clock time and date at job start Sun Mar 29 2020 21:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47152 * 2 1 4 4 C 1.53005 * 109.46968 * 119.99347 * 2 1 3 5 5 N 1.46907 * 109.46700 * 61.56971 * 4 2 1 6 6 C 1.46897 * 110.99857 * 183.22009 * 5 4 2 7 7 C 1.52995 * 109.47346 * 185.31249 * 6 5 4 8 8 C 1.50699 * 115.54964 * 294.40786 * 7 6 5 9 9 H 1.07999 * 120.00125 * 95.39297 * 8 7 6 10 10 C 1.37881 * 120.00032 * 275.11168 * 8 7 6 11 11 N 1.31513 * 119.99531 * 355.55677 * 10 8 7 12 12 Si 1.86802 * 120.00145 * 175.55015 * 10 8 7 13 13 H 1.48499 * 109.46943 * 0.02562 * 12 10 8 14 14 H 1.48492 * 109.46946 * 120.00374 * 12 10 8 15 15 H 1.48504 * 109.47120 * 240.00498 * 12 10 8 16 16 C 1.53001 * 117.50170 * 80.07344 * 7 6 5 17 17 C 1.52999 * 117.50331 * 148.73611 * 7 6 5 18 18 H 1.09006 * 109.46806 * 63.41948 * 1 2 3 19 19 H 1.08996 * 109.47052 * 183.41560 * 1 2 3 20 20 H 1.08997 * 109.47683 * 303.41650 * 1 2 3 21 21 H 1.08991 * 109.47409 * 239.99365 * 2 1 3 22 22 H 1.08997 * 109.47335 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47073 * 299.99609 * 3 2 1 24 24 H 1.09004 * 109.47466 * 59.99719 * 3 2 1 25 25 H 1.08992 * 109.47150 * 301.57394 * 4 2 1 26 26 H 1.08994 * 109.46969 * 181.56482 * 4 2 1 27 27 H 1.00902 * 111.00137 * 307.17443 * 5 4 2 28 28 H 1.08998 * 109.47216 * 65.31111 * 6 5 4 29 29 H 1.09005 * 109.47419 * 305.31106 * 6 5 4 30 30 H 0.97009 * 119.99379 * 184.99441 * 11 10 8 31 31 H 1.08993 * 117.50440 * 215.00813 * 16 7 6 32 32 H 1.09005 * 117.49590 * 0.02562 * 16 7 6 33 33 H 1.09003 * 117.49710 * 359.97322 * 17 7 6 34 34 H 1.08995 * 117.50062 * 144.97599 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.5814 -2.1167 1.2306 6 6 1.9884 -2.8210 2.4538 7 6 1.6108 -4.2993 2.3408 8 6 0.1332 -4.5906 2.2887 9 1 -0.3595 -4.7150 1.3358 10 6 -0.5887 -4.7040 3.4580 11 7 0.0265 -4.6451 4.6189 12 14 -2.4405 -4.9411 3.3931 13 1 -2.8860 -4.9741 1.9769 14 1 -2.7990 -6.2214 4.0544 15 1 -3.1085 -3.8166 4.0965 16 6 2.5384 -5.2053 1.5285 17 6 2.5061 -5.3138 3.0551 18 1 -0.3633 0.4599 -0.9191 19 1 -0.3633 -1.0258 0.0612 20 1 -0.3634 0.5659 0.8577 21 1 1.8934 -0.5139 -0.8898 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6538 -0.2238 2.1390 26 1 3.1296 -0.6969 1.2635 27 1 0.5822 -2.1673 1.0996 28 1 1.4810 -2.3810 3.3123 29 1 3.0669 -2.7304 2.5836 30 1 -0.4693 -4.7971 5.4387 31 1 2.0799 -6.0119 0.9565 32 1 3.4179 -4.7481 1.0750 33 1 3.3644 -4.9280 3.6052 34 1 2.0262 -6.1916 3.4877 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853490.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:00 Heat of formation + Delta-G solvation = -13.148362 kcal Electronic energy + Delta-G solvation = -12829.795567 eV Core-core repulsion = 10761.876015 eV Total energy + Delta-G solvation = -2067.919551 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.00236 -37.52493 -34.10774 -33.76604 -28.13992 -28.02617 -27.07728 -24.31273 -22.78183 -21.20234 -20.60847 -17.92639 -16.94817 -16.63118 -15.86162 -15.53539 -15.34111 -14.58335 -14.42901 -13.64161 -13.51357 -13.12688 -13.03985 -12.89945 -12.86124 -12.66583 -12.30961 -11.99270 -11.84039 -11.59166 -11.51846 -11.13881 -10.81112 -10.37358 -9.91870 -9.10727 -8.07792 -6.20444 1.38939 1.42317 1.52994 2.42733 3.19203 3.32956 3.76905 4.04471 4.09176 4.24374 4.37891 4.63063 4.67120 4.72994 4.79280 4.85812 4.87994 4.99796 5.01487 5.06501 5.08735 5.13441 5.27895 5.30955 5.48493 5.51627 5.65659 5.71337 5.81815 6.37978 6.48551 6.67875 6.89638 7.47771 8.99158 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030859 B = 0.010634 C = 0.008688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.121533 B = 2632.393039 C = 3222.034042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.139 4.139 4 C 0.061 3.939 5 N -0.682 5.682 6 C 0.119 3.881 7 C 0.021 3.979 8 C -0.502 4.502 9 H 0.053 0.947 10 C 0.022 3.978 11 N -0.909 5.909 12 Si 0.948 3.052 13 H -0.265 1.265 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.178 4.178 17 C -0.162 4.162 18 H 0.071 0.929 19 H 0.044 0.956 20 H 0.048 0.952 21 H 0.074 0.926 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.013 0.987 26 H 0.067 0.933 27 H 0.341 0.659 28 H -0.003 1.003 29 H 0.047 0.953 30 H 0.258 0.742 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 8.701 -6.844 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.197 4.197 4 C -0.069 4.069 5 N -0.314 5.314 6 C -0.011 4.011 7 C 0.020 3.980 8 C -0.540 4.540 9 H 0.071 0.929 10 C -0.178 4.178 11 N -0.547 5.547 12 Si 0.774 3.226 13 H -0.189 1.189 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.216 4.216 17 C -0.201 4.201 18 H 0.090 0.910 19 H 0.063 0.937 20 H 0.068 0.932 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.160 0.840 28 H 0.016 0.984 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.600 8.540 -7.012 11.352 hybrid contribution -1.532 -0.104 1.212 1.956 sum 1.068 8.437 -5.800 10.293 Atomic orbital electron populations 1.21867 0.95497 1.01326 1.02075 1.21091 0.95821 0.96546 0.97475 1.21760 1.01236 0.94462 1.02218 1.22093 0.99903 0.88085 0.96803 1.60517 1.20242 1.13080 1.37592 1.21184 0.96550 0.94104 0.89235 1.18933 0.91396 0.88359 0.99264 1.20735 0.92525 1.48663 0.92030 0.92923 1.25699 1.01988 0.94820 0.95280 1.70132 1.37094 1.49792 0.97724 0.85662 0.81194 0.77427 0.78337 1.18945 1.20924 1.20873 1.22838 1.02179 1.03632 0.92912 1.22408 1.01406 1.02843 0.93406 0.91043 0.93673 0.93240 0.90742 0.92159 0.91225 0.92932 0.96909 0.91441 0.83979 0.98428 0.93466 0.93297 0.91026 0.89673 0.91276 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 8.99 71.98 0.65 -3.25 16 2 C -0.09 -2.35 3.15 -10.79 -0.03 -2.38 16 3 C -0.14 -2.81 9.19 71.98 0.66 -2.15 16 4 C 0.06 1.95 5.19 86.30 0.45 2.40 16 5 N -0.68 -27.13 6.49 -513.89 -3.33 -30.46 16 6 C 0.12 5.46 5.54 86.30 0.48 5.94 16 7 C 0.02 1.06 1.64 -52.93 -0.09 0.97 16 8 C -0.50 -27.40 8.34 25.60 0.21 -27.18 16 9 H 0.05 2.89 7.82 -2.91 -0.02 2.86 16 10 C 0.02 1.21 5.43 84.66 0.46 1.67 16 11 N -0.91 -52.40 12.66 21.45 0.27 -52.12 16 12 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 C -0.18 -8.02 9.96 30.62 0.30 -7.71 16 17 C -0.16 -7.95 9.15 30.62 0.28 -7.67 16 18 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 19 H 0.04 1.34 6.37 -2.39 -0.02 1.33 16 20 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 23 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.34 14.22 6.24 -89.69 -0.56 13.66 16 28 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.05 2.04 8.08 -2.38 -0.02 2.02 16 30 H 0.26 14.21 8.32 -92.70 -0.77 13.44 16 31 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.08 3.45 8.14 -2.38 -0.02 3.43 16 33 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -58.08 279.26 2.82 -55.27 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.48 Total: 21.23 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 3.37 Total: -39.37 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.06 Total: -82.59 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -58.08 2.82 -55.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853490.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.117 kcal (2) G-P(sol) polarization free energy of solvation -58.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds