Wall clock time and date at job start Sun Mar 29 2020 21:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47382 * 2 1 4 4 C 1.53001 * 109.47173 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46844 * 180.02562 * 4 3 2 6 6 C 1.46902 * 110.99651 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46866 * 185.37362 * 6 5 4 8 8 C 1.50704 * 115.55169 * 294.79949 * 7 6 5 9 9 H 1.08003 * 120.00137 * 95.20107 * 8 7 6 10 10 C 1.37877 * 119.99772 * 274.92999 * 8 7 6 11 11 N 1.31508 * 120.00319 * 355.41935 * 10 8 7 12 12 Si 1.86804 * 119.99690 * 175.41526 * 10 8 7 13 13 H 1.48503 * 109.46535 * 90.00186 * 12 10 8 14 14 H 1.48497 * 109.47005 * 209.99611 * 12 10 8 15 15 H 1.48495 * 109.47372 * 330.00093 * 12 10 8 16 16 C 1.53004 * 117.50138 * 80.46976 * 7 6 5 17 17 C 1.52998 * 117.50158 * 149.12768 * 7 6 5 18 18 H 1.09001 * 109.47168 * 59.99969 * 1 2 3 19 19 H 1.08994 * 109.47102 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.46994 * 300.00140 * 1 2 3 21 21 H 1.08996 * 109.46994 * 239.99860 * 2 1 3 22 22 H 1.09001 * 109.47168 * 120.00031 * 2 1 3 23 23 H 1.08996 * 109.47170 * 59.99968 * 3 2 1 24 24 H 1.09005 * 109.46645 * 299.99780 * 3 2 1 25 25 H 1.08996 * 109.47366 * 59.99760 * 4 3 2 26 26 H 1.09005 * 109.46888 * 299.99304 * 4 3 2 27 27 H 1.00902 * 110.99737 * 303.94301 * 5 4 3 28 28 H 1.08995 * 109.47311 * 65.37944 * 6 5 4 29 29 H 1.08993 * 109.47076 * 305.37045 * 6 5 4 30 30 H 0.97004 * 120.00286 * 185.00248 * 11 10 8 31 31 H 1.08998 * 117.49727 * 215.00494 * 16 7 6 32 32 H 1.09000 * 117.49374 * 0.02562 * 16 7 6 33 33 H 1.09004 * 117.49634 * 359.97438 * 17 7 6 34 34 H 1.08994 * 117.50107 * 144.97003 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0597 2.8274 0.0000 6 6 5.5282 2.8666 0.0000 7 6 5.9997 4.3158 0.1357 8 6 5.6545 5.2224 -1.0175 9 1 4.7655 5.8344 -0.9759 10 6 6.4764 5.2747 -2.1233 11 7 7.6070 4.6032 -2.1346 12 14 5.9838 6.2995 -3.6054 13 1 6.5159 7.6775 -3.4532 14 1 6.5412 5.6870 -4.8380 15 1 4.5029 6.3487 -3.7032 16 6 6.0071 4.9280 1.5379 17 6 7.3273 4.5623 0.8552 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.6768 1.9564 0.8899 24 1 1.6767 1.9563 -0.8901 25 1 3.9331 0.9287 -0.8908 26 1 3.9338 0.9286 0.8892 27 1 3.6840 3.3441 -0.7811 28 1 5.9029 2.4487 -0.9344 29 1 5.9072 2.2812 0.8377 30 1 8.2193 4.6968 -2.8811 31 1 5.7621 5.9864 1.6262 32 1 5.6763 4.2981 2.3638 33 1 7.8646 3.6921 1.2322 34 1 7.9512 5.3799 0.4941 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:02 Heat of formation + Delta-G solvation = -17.053916 kcal Electronic energy + Delta-G solvation = -12534.350135 eV Core-core repulsion = 10466.261226 eV Total energy + Delta-G solvation = -2068.088909 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.86748 -37.09550 -34.51125 -33.92018 -29.80873 -27.60970 -25.83332 -23.22314 -22.70336 -21.97412 -20.87512 -17.91353 -16.93851 -16.61665 -15.92027 -15.71199 -15.34545 -14.69529 -14.38248 -13.84954 -13.47939 -13.35259 -12.95445 -12.92246 -12.80364 -12.31290 -12.20298 -11.99692 -11.89188 -11.77269 -11.41763 -11.15010 -10.82866 -10.37134 -9.91971 -9.12769 -8.07433 -6.20294 1.40997 1.42978 1.52421 2.43192 3.19558 3.29714 3.74499 4.04679 4.18305 4.33228 4.35130 4.50152 4.62853 4.70470 4.74644 4.79842 4.94933 4.98228 5.02160 5.06600 5.08740 5.16182 5.30005 5.31594 5.43750 5.51530 5.65175 5.71167 5.81474 6.36593 6.48426 6.65105 6.89387 7.48012 8.99388 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.032894 B = 0.008549 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.010572 B = 3274.493994 C = 3813.858842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.109 4.109 4 C 0.057 3.943 5 N -0.683 5.683 6 C 0.120 3.880 7 C 0.019 3.981 8 C -0.502 4.502 9 H 0.053 0.947 10 C 0.022 3.978 11 N -0.910 5.910 12 Si 0.949 3.051 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.265 1.265 16 C -0.179 4.179 17 C -0.161 4.161 18 H 0.052 0.948 19 H 0.064 0.936 20 H 0.056 0.944 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.014 0.986 26 H 0.067 0.933 27 H 0.339 0.661 28 H -0.001 1.001 29 H 0.047 0.953 30 H 0.258 0.742 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.564 -6.942 3.016 12.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.147 4.147 4 C -0.072 4.072 5 N -0.313 5.313 6 C -0.010 4.010 7 C 0.019 3.981 8 C -0.540 4.540 9 H 0.071 0.929 10 C -0.177 4.177 11 N -0.549 5.549 12 Si 0.775 3.225 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.190 1.190 16 C -0.216 4.216 17 C -0.200 4.200 18 H 0.071 0.929 19 H 0.083 0.917 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.017 0.983 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.491 -6.974 3.556 12.303 hybrid contribution 0.583 0.395 -1.814 1.945 sum -8.908 -6.579 1.743 11.210 Atomic orbital electron populations 1.21744 0.94811 1.02121 1.01938 1.21471 0.96684 0.95546 1.02111 1.21527 0.93291 0.97668 1.02201 1.22043 0.96217 0.89469 0.99518 1.60451 1.07825 1.12981 1.50084 1.21178 0.87299 0.95852 0.96637 1.18956 0.96312 0.92612 0.90246 1.20705 1.08936 1.23848 1.00554 0.92881 1.25697 0.95041 0.96405 1.00597 1.70120 1.10196 1.42273 1.32268 0.85699 0.78862 0.78748 0.79240 1.20419 1.21279 1.18973 1.22843 1.01723 0.99888 0.97152 1.22397 0.91090 1.01086 1.05377 0.92883 0.91743 0.92509 0.92256 0.91565 0.91474 0.92596 0.96756 0.91466 0.84292 0.98319 0.93413 0.93273 0.91022 0.89672 0.91262 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.91 71.98 0.71 -1.90 16 2 C -0.12 -2.50 5.93 30.60 0.18 -2.32 16 3 C -0.11 -2.84 5.47 30.60 0.17 -2.67 16 4 C 0.06 1.82 5.68 86.30 0.49 2.31 16 5 N -0.68 -27.16 6.47 -513.90 -3.32 -30.48 16 6 C 0.12 5.48 5.54 86.30 0.48 5.96 16 7 C 0.02 0.97 1.65 -52.92 -0.09 0.88 16 8 C -0.50 -27.42 8.33 25.60 0.21 -27.21 16 9 H 0.05 2.90 7.82 -2.91 -0.02 2.87 16 10 C 0.02 1.23 5.43 84.66 0.46 1.69 16 11 N -0.91 -52.49 12.65 21.45 0.27 -52.22 16 12 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 C -0.18 -8.04 9.96 30.62 0.30 -7.73 16 17 C -0.16 -7.89 9.14 30.62 0.28 -7.61 16 18 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 19 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.34 14.19 8.31 -89.69 -0.75 13.44 16 28 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.05 2.05 8.08 -2.39 -0.02 2.04 16 30 H 0.26 14.26 8.32 -92.70 -0.77 13.49 16 31 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -57.91 283.54 2.46 -55.44 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.29 Total: 20.47 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 3.20 Total: -38.59 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -3.05 Total: -82.71 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -57.91 2.46 -55.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.387 kcal (2) G-P(sol) polarization free energy of solvation -57.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds