Wall clock time and date at job start Sun Mar 29 2020 21:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.50699 * 109.46719 * 120.00116 * 2 1 3 5 5 H 1.08006 * 120.00161 * 119.99863 * 4 2 1 6 6 C 1.37881 * 119.99813 * 299.99895 * 4 2 1 7 7 N 1.31521 * 119.99973 * 180.02562 * 6 4 2 8 8 Si 1.86792 * 120.00131 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46968 * 90.00114 * 8 6 4 10 10 H 1.48503 * 109.47482 * 210.00132 * 8 6 4 11 11 H 1.48503 * 109.47229 * 330.00408 * 8 6 4 12 12 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 13 13 C 1.46906 * 110.99573 * 85.00442 * 12 2 1 14 14 H 1.08999 * 110.43220 * 327.54025 * 13 12 2 15 15 C 1.54886 * 110.48351 * 90.22620 * 13 12 2 16 16 C 1.54893 * 102.74378 * 156.62123 * 15 13 12 17 17 C 1.54265 * 104.19868 * 322.05535 * 16 15 13 18 18 H 1.09004 * 110.02742 * 264.33386 * 17 16 15 19 19 C 1.52999 * 110.07445 * 142.91935 * 17 16 15 20 20 C 1.53878 * 106.59518 * 23.60997 * 17 16 15 21 21 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 23 23 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 24 24 H 0.96996 * 119.99901 * 179.97438 * 7 6 4 25 25 H 1.00896 * 111.00219 * 208.96081 * 12 2 1 26 26 H 1.09001 * 110.75545 * 274.93111 * 15 13 12 27 27 H 1.08997 * 110.75723 * 38.30580 * 15 13 12 28 28 H 1.09011 * 110.48266 * 203.37567 * 16 15 13 29 29 H 1.09001 * 110.49045 * 80.73700 * 16 15 13 30 30 H 1.08996 * 109.46831 * 302.81107 * 19 17 16 31 31 H 1.09002 * 109.46773 * 62.80834 * 19 17 16 32 32 H 1.08997 * 109.46882 * 182.80857 * 19 17 16 33 33 H 1.09005 * 110.03092 * 240.71537 * 20 17 16 34 34 H 1.08995 * 110.06622 * 119.30820 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 2.1378 -0.8591 3.5566 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8746 2.6992 10 1 0.9771 1.9954 3.9070 11 1 0.8491 2.1773 1.4922 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 1 1.2904 0.9684 -2.2825 15 6 3.4704 0.9062 -2.4195 16 6 3.5777 1.3039 -3.9126 17 6 2.9288 0.1244 -4.6659 18 1 3.6964 -0.5766 -4.9941 19 6 2.1410 0.6409 -5.8715 20 6 1.9781 -0.5632 -3.6703 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.9037 -0.5274 4.4376 25 1 2.9172 -1.1207 -1.0286 26 1 3.4997 1.7895 -1.7814 27 1 4.2606 0.2061 -2.1484 28 1 4.6224 1.4142 -4.2039 29 1 3.0285 2.2261 -4.1023 30 1 1.3930 1.3592 -5.5360 31 1 2.8228 1.1259 -6.5702 32 1 1.6463 -0.1943 -6.3671 33 1 2.2843 -1.5979 -3.5155 34 1 0.9553 -0.5289 -4.0453 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122639816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:22 Heat of formation + Delta-G solvation = -18.606477 kcal Electronic energy + Delta-G solvation = -12957.186328 eV Core-core repulsion = 10889.030095 eV Total energy + Delta-G solvation = -2068.156233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.53705 -35.29996 -32.36823 -30.59929 -29.00216 -27.01342 -25.05743 -23.98753 -20.49245 -19.82202 -19.20035 -16.72484 -15.57863 -15.39463 -14.44171 -13.80464 -13.32525 -13.12770 -12.94134 -12.76929 -12.17345 -12.01693 -11.94941 -11.46526 -10.93361 -10.69647 -10.63014 -10.57489 -10.48268 -10.33566 -10.06268 -10.01422 -9.44141 -8.99684 -8.59300 -7.38268 -6.08505 -4.07852 3.27808 3.36982 3.39625 4.39832 4.74932 4.89162 4.95090 5.23410 5.31819 5.46611 5.59202 5.68431 5.78178 5.79890 5.99750 6.03722 6.07529 6.13995 6.26079 6.32118 6.42731 6.50638 6.55158 6.62089 6.67939 6.79634 6.89274 7.43497 7.61250 8.01770 8.41592 8.65799 8.96731 9.54246 11.04604 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060361 B = 0.008505 C = 0.008368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.760921 B = 3291.264462 C = 3345.261989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.182 3.818 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.078 0.922 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.673 5.673 13 C 0.084 3.916 14 H 0.072 0.928 15 C -0.153 4.153 16 C -0.117 4.117 17 C -0.099 4.099 18 H 0.067 0.933 19 C -0.143 4.143 20 C -0.109 4.109 21 H 0.057 0.943 22 H 0.036 0.964 23 H 0.025 0.975 24 H 0.264 0.736 25 H 0.340 0.660 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 4.289 -14.500 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.073 3.927 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.096 0.904 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.226 1.226 11 H -0.194 1.194 12 N -0.303 5.303 13 C -0.028 4.028 14 H 0.090 0.910 15 C -0.193 4.193 16 C -0.155 4.155 17 C -0.118 4.118 18 H 0.085 0.915 19 C -0.200 4.200 20 C -0.148 4.148 21 H 0.076 0.924 22 H 0.054 0.946 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.159 0.841 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.210 4.019 -14.448 14.999 hybrid contribution 0.145 1.346 0.518 1.449 sum -0.065 5.365 -13.931 14.928 Atomic orbital electron populations 1.22084 0.98886 1.00959 0.97582 1.19511 0.91582 0.93019 0.88609 0.98204 1.21129 1.32181 1.13689 0.88676 0.90413 1.24940 0.95719 0.96717 0.95775 1.69897 1.45649 1.40316 0.97906 0.86799 0.80688 0.83622 0.76703 1.20539 1.22566 1.19411 1.60547 1.32899 1.31947 1.04948 1.22422 0.95125 0.93541 0.91685 0.91000 1.23225 0.99248 1.01017 0.95782 1.22366 0.99855 0.97762 0.95519 1.21759 0.97613 0.97088 0.95313 0.91489 1.21877 0.99804 1.00770 0.97533 1.22227 0.98638 0.99815 0.94096 0.92390 0.94600 0.95645 0.92620 0.84132 0.91952 0.91363 0.92346 0.91945 0.92740 0.93246 0.92930 0.91269 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.88 37.16 0.33 -2.82 16 2 C 0.18 4.38 2.06 -68.86 -0.14 4.24 16 3 H 0.00 0.01 6.91 -51.93 -0.36 -0.35 16 4 C -0.52 -14.69 9.17 -34.44 -0.32 -15.00 16 5 H 0.08 2.37 7.86 -52.48 -0.41 1.96 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 8 Si 0.89 22.39 24.37 -169.99 -4.14 18.25 16 9 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.67 -13.95 6.09 -99.22 -0.60 -14.55 16 13 C 0.08 1.43 2.93 -66.05 -0.19 1.24 16 14 H 0.07 1.29 7.20 -51.93 -0.37 0.92 16 15 C -0.15 -2.38 6.46 -24.74 -0.16 -2.54 16 16 C -0.12 -1.48 6.36 -25.07 -0.16 -1.64 16 17 C -0.10 -1.21 3.50 -89.50 -0.31 -1.52 16 18 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 19 C -0.14 -1.49 8.85 37.16 0.33 -1.16 16 20 C -0.11 -1.58 6.19 -25.61 -0.16 -1.74 16 21 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 22 H 0.04 0.84 3.27 -51.93 -0.17 0.67 16 23 H 0.02 0.51 7.50 -51.92 -0.39 0.12 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.34 7.07 7.72 -39.29 -0.30 6.76 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.07 7.79 -51.93 -0.40 0.66 16 28 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.06 0.76 7.84 -51.93 -0.41 0.35 16 30 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.06 0.85 7.67 -51.93 -0.40 0.45 16 LS Contribution 261.88 15.07 3.95 3.95 Total: -1.00 -29.38 261.88 -6.68 -36.06 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.77 Total: 2.20 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -0.88 Total: -19.00 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.17 Total: -41.46 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.38 -6.68 -36.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122639816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.455 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds