Wall clock time and date at job start Sun Mar 29 2020 21:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46993 * 2 1 4 4 C 1.50701 * 109.46952 * 120.00257 * 2 1 3 5 5 H 1.08003 * 119.99992 * 24.80191 * 4 2 1 6 6 C 1.37872 * 119.99844 * 204.80584 * 4 2 1 7 7 N 1.31512 * 120.00301 * 353.62295 * 6 4 2 8 8 Si 1.86805 * 119.99930 * 173.62196 * 6 4 2 9 9 H 1.48490 * 109.47077 * 90.00016 * 8 6 4 10 10 H 1.48507 * 109.46701 * 209.99962 * 8 6 4 11 11 H 1.48498 * 109.46944 * 329.99683 * 8 6 4 12 12 N 1.46903 * 109.46937 * 239.99944 * 2 1 3 13 13 C 1.46900 * 110.99618 * 85.00301 * 12 2 1 14 14 H 1.08993 * 110.67805 * 31.76525 * 13 12 2 15 15 C 1.54883 * 110.75511 * 268.32128 * 13 12 2 16 16 C 1.54265 * 104.20015 * 203.74473 * 15 13 12 17 17 C 1.53879 * 106.59564 * 23.61110 * 16 15 13 18 18 H 1.08995 * 110.03885 * 240.71589 * 17 16 15 19 19 C 1.53010 * 110.06987 * 119.30476 * 17 16 15 20 20 C 1.54271 * 106.59748 * 0.02562 * 17 16 15 21 21 H 1.09001 * 109.47178 * 54.50286 * 1 2 3 22 22 H 1.09002 * 109.47007 * 174.50206 * 1 2 3 23 23 H 1.09001 * 109.46961 * 294.50410 * 1 2 3 24 24 H 0.97009 * 119.99732 * 1.60996 * 7 6 4 25 25 H 1.00904 * 110.99743 * 208.95315 * 12 2 1 26 26 H 1.08994 * 110.49004 * 322.42983 * 15 13 12 27 27 H 1.09007 * 110.48407 * 85.06869 * 15 13 12 28 28 H 1.08994 * 110.03522 * 264.33314 * 16 15 13 29 29 H 1.08999 * 110.07249 * 142.91829 * 16 15 13 30 30 H 1.08995 * 109.47189 * 302.80875 * 19 17 16 31 31 H 1.08994 * 109.46695 * 62.81150 * 19 17 16 32 32 H 1.08998 * 109.46701 * 182.80920 * 19 17 16 33 33 H 1.09005 * 110.48231 * 217.71509 * 20 17 16 34 34 H 1.08995 * 110.49040 * 95.06680 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 1.4118 -1.4464 1.7202 6 6 3.2840 -0.4210 1.7309 7 7 4.0886 0.3798 1.0670 8 14 3.8369 -1.1663 3.3521 9 1 4.5121 -2.4637 3.0957 10 1 4.7829 -0.2404 4.0254 11 1 2.6553 -1.3869 4.2240 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3468 14 1 2.3078 1.2371 -2.0181 15 6 0.7607 0.1834 -3.1532 16 6 1.1646 0.6554 -4.5652 17 6 2.6699 0.3707 -4.7099 18 1 3.2107 1.3007 -4.8853 19 6 2.9116 -0.6018 -5.8661 20 6 3.1279 -0.2649 -3.3809 21 1 -0.3633 0.5967 -0.8367 22 1 -0.3633 -1.0230 -0.0985 23 1 -0.3633 0.4262 0.9351 24 1 3.7928 0.7854 0.2369 25 1 2.9173 -1.1205 -1.0287 26 1 0.3654 -0.8317 -3.1887 27 1 0.0284 0.8639 -2.7185 28 1 0.9749 1.7235 -4.6704 29 1 0.6056 0.1011 -5.3191 30 1 2.3477 -1.5185 -5.6938 31 1 2.5850 -0.1443 -6.7999 32 1 3.9745 -0.8354 -5.9282 33 1 4.1234 0.0887 -3.1121 34 1 3.1150 -1.3523 -3.4536 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122640253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:25 Heat of formation + Delta-G solvation = -33.693138 kcal Electronic energy + Delta-G solvation = -13056.779317 eV Core-core repulsion = 10987.968878 eV Total energy + Delta-G solvation = -2068.810440 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.34071 -35.29824 -32.10643 -30.11657 -29.16684 -26.56956 -24.77923 -23.84503 -20.35659 -19.70111 -19.14500 -16.83482 -15.68902 -14.64964 -13.95734 -13.81249 -13.69288 -13.25490 -12.86452 -12.70548 -12.06997 -11.62681 -11.31191 -10.88314 -10.83257 -10.70699 -10.64105 -10.52595 -10.27156 -10.15354 -10.12600 -9.86404 -9.65842 -8.59448 -8.37910 -7.18050 -6.42811 -4.14821 3.42082 3.45483 3.61690 4.49511 4.93373 4.96068 5.03535 5.25452 5.58533 5.65799 5.75358 5.78249 5.89038 5.95267 6.07121 6.20512 6.23170 6.34871 6.36637 6.43391 6.52471 6.66502 6.73281 6.74616 6.85499 6.88172 7.11677 7.41084 7.98381 8.41589 8.57563 8.74752 8.89307 9.58781 10.95122 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051841 B = 0.009026 C = 0.008107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.986420 B = 3101.368331 C = 3453.161406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.188 3.812 3 H 0.003 0.997 4 C -0.591 4.591 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 1.073 2.927 9 H -0.287 1.287 10 H -0.285 1.285 11 H -0.288 1.288 12 N -0.681 5.681 13 C 0.079 3.921 14 H 0.038 0.962 15 C -0.109 4.109 16 C -0.120 4.120 17 C -0.095 4.095 18 H 0.064 0.936 19 C -0.141 4.141 20 C -0.122 4.122 21 H 0.025 0.975 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.267 0.733 25 H 0.340 0.660 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 -0.187 -9.523 9.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 H 0.020 0.980 4 C -0.630 4.630 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.547 5.547 8 Si 0.901 3.099 9 H -0.214 1.214 10 H -0.211 1.211 11 H -0.214 1.214 12 N -0.314 5.314 13 C -0.032 4.032 14 H 0.056 0.944 15 C -0.148 4.148 16 C -0.158 4.158 17 C -0.114 4.114 18 H 0.083 0.917 19 C -0.198 4.198 20 C -0.160 4.160 21 H 0.044 0.956 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.159 0.841 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.215 -0.506 -8.617 8.911 hybrid contribution -0.508 0.670 -0.890 1.225 sum -2.723 0.165 -9.506 9.890 Atomic orbital electron populations 1.21719 0.98145 0.99806 0.98199 1.19322 0.91493 0.93007 0.88015 0.97976 1.22116 1.04094 1.25694 1.11117 0.92923 1.25955 0.93300 0.95979 1.03312 1.70821 1.36954 1.29679 1.17227 0.83487 0.75597 0.75938 0.74880 1.21416 1.21059 1.21400 1.61177 1.32751 1.32285 1.05177 1.22519 0.93528 0.95181 0.91935 0.94423 1.22411 0.97773 1.01146 0.93444 1.22222 0.95399 1.00282 0.97899 1.21673 0.96226 0.98348 0.95191 0.91707 1.21863 1.01214 0.99284 0.97479 1.22617 0.98514 1.00761 0.94062 0.95620 0.93723 0.94180 0.92172 0.84086 0.91253 0.92617 0.92638 0.92268 0.92618 0.93270 0.93025 0.92325 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.12 37.16 0.34 -2.39 16 2 C 0.19 4.81 2.11 -68.86 -0.15 4.67 16 3 H 0.00 0.07 6.34 -51.93 -0.33 -0.26 16 4 C -0.59 -16.61 8.29 -34.44 -0.29 -16.90 16 5 H 0.05 1.50 7.82 -52.48 -0.41 1.09 16 6 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16 7 N -0.91 -27.01 13.62 55.43 0.75 -26.26 16 8 Si 1.07 25.10 29.91 -169.99 -5.08 20.02 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.68 -15.80 6.21 -98.86 -0.61 -16.42 16 13 C 0.08 1.57 3.20 -65.71 -0.21 1.36 16 14 H 0.04 0.82 7.44 -51.93 -0.39 0.44 16 15 C -0.11 -1.88 5.73 -25.08 -0.14 -2.02 16 16 C -0.12 -1.70 6.46 -25.61 -0.17 -1.87 16 17 C -0.10 -1.36 3.50 -89.49 -0.31 -1.67 16 18 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.14 -1.71 8.84 37.16 0.33 -1.38 16 20 C -0.12 -2.08 5.74 -25.06 -0.14 -2.23 16 21 H 0.02 0.52 6.15 -51.93 -0.32 0.20 16 22 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.27 7.92 6.84 -40.82 -0.28 7.64 16 25 H 0.34 8.50 8.05 -39.29 -0.32 8.18 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 0.96 6.71 -51.93 -0.35 0.62 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.22 7.85 -51.93 -0.41 0.82 16 LS Contribution 267.64 15.07 4.03 4.03 Total: -1.00 -28.64 267.64 -7.54 -36.18 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.80 Total: 4.43 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -0.84 Total: -21.98 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.14 Total: -42.68 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.64 -7.54 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122640253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.486 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds