Wall clock time and date at job start Sun Mar 29 2020 21:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46617 * 2 1 4 4 H 1.09003 * 110.00777 * 57.96784 * 3 2 1 5 5 C 1.54318 * 109.89039 * 296.84766 * 3 2 1 6 6 C 1.55139 * 103.01654 * 218.31163 * 5 3 2 7 7 C 1.54904 * 101.65511 * 35.65237 * 6 5 3 8 8 H 1.09006 * 110.37369 * 81.76044 * 7 6 5 9 9 C 1.53001 * 110.46752 * 204.04964 * 7 6 5 10 10 N 1.47438 * 109.88607 * 179.07593 * 3 2 1 11 11 C 1.46902 * 111.00379 * 356.15178 * 10 3 2 12 12 C 1.50706 * 109.47312 * 193.12263 * 11 10 3 13 13 H 1.07999 * 119.99630 * 5.37169 * 12 11 10 14 14 C 1.37878 * 119.99686 * 185.36502 * 12 11 10 15 15 N 1.31512 * 119.99432 * 179.72335 * 14 12 11 16 16 Si 1.86797 * 120.00197 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47317 * 269.72465 * 16 14 12 18 18 H 1.48503 * 109.47152 * 29.71966 * 16 14 12 19 19 H 1.48504 * 109.47258 * 149.72249 * 16 14 12 20 20 H 1.09007 * 109.47212 * 185.70238 * 1 2 3 21 21 H 1.08994 * 109.47545 * 305.70374 * 1 2 3 22 22 H 1.09008 * 109.47163 * 65.70725 * 1 2 3 23 23 H 1.08997 * 109.47509 * 240.00611 * 2 1 3 24 24 H 1.09002 * 109.47104 * 119.99853 * 2 1 3 25 25 H 1.08995 * 110.70395 * 99.93273 * 5 3 2 26 26 H 1.09000 * 110.70614 * 336.69218 * 5 3 2 27 27 H 1.09004 * 110.99033 * 277.55767 * 6 5 3 28 28 H 1.09004 * 110.98858 * 153.74736 * 6 5 3 29 29 H 1.09005 * 109.46979 * 182.90010 * 9 7 6 30 30 H 1.09001 * 109.46984 * 302.89918 * 9 7 6 31 31 H 1.08997 * 109.46886 * 62.89932 * 9 7 6 32 32 H 1.08998 * 109.47168 * 73.12170 * 11 10 3 33 33 H 1.09002 * 109.46985 * 313.12169 * 11 10 3 34 34 H 0.97000 * 119.99747 * 180.27323 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6520 1.9753 0.8683 5 6 1.5969 2.1560 -1.2947 6 6 2.8284 3.0297 -1.6510 7 6 3.9986 2.1173 -1.2066 8 1 4.2166 1.3774 -1.9768 9 6 5.2440 2.9532 -0.9049 10 7 3.5140 1.4535 0.0224 11 6 4.0491 0.0896 0.1299 12 6 5.5155 0.1507 0.4719 13 1 5.9817 1.1019 0.6822 14 6 6.2618 -1.0078 0.5165 15 7 7.5427 -0.9538 0.8097 16 14 5.4554 -2.6529 0.1523 17 1 4.9367 -3.2401 1.4139 18 1 4.3329 -2.4541 -0.7993 19 1 6.4556 -3.5725 -0.4471 20 1 -0.3634 -1.0226 0.1021 21 1 -0.3634 0.5997 0.8344 22 1 -0.3634 0.4228 -0.9367 23 1 1.8934 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 0.7221 2.7797 -1.1111 26 1 1.3966 1.4320 -2.0845 27 1 2.8230 3.9614 -1.0852 28 1 2.8712 3.2257 -2.7225 29 1 6.0707 2.2924 -0.6440 30 1 5.5106 3.5386 -1.7849 31 1 5.0380 3.6241 -0.0710 32 1 3.9190 -0.4277 -0.8207 33 1 3.5155 -0.4493 0.9128 34 1 8.0686 -1.7684 0.8372 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124609615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:59 Heat of formation + Delta-G solvation = -3.193117 kcal Electronic energy + Delta-G solvation = -13369.223235 eV Core-core repulsion = 11301.735375 eV Total energy + Delta-G solvation = -2067.487860 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.06638 -33.49958 -33.00051 -31.13141 -29.39892 -26.84614 -24.75873 -22.82323 -21.66993 -20.02296 -18.29899 -16.79589 -15.37734 -15.07548 -14.43840 -13.99326 -13.38414 -13.23784 -12.58141 -12.33206 -12.17572 -11.95120 -11.81238 -11.20193 -11.03961 -10.85430 -10.69710 -10.53862 -10.40665 -10.12191 -9.96598 -9.85935 -9.67106 -8.97233 -8.48698 -7.25485 -5.99929 -3.95636 3.29895 3.37503 3.39120 4.45670 4.76115 5.09376 5.14714 5.31337 5.32215 5.50595 5.58322 5.64972 5.89334 5.92839 6.04368 6.10877 6.20488 6.23595 6.26166 6.38731 6.49490 6.50667 6.57717 6.72455 6.91228 6.92251 7.04495 7.27584 7.70927 8.03086 8.12949 8.74826 9.12092 9.62902 11.12947 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031955 B = 0.014068 C = 0.010439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.030753 B = 1989.823638 C = 2681.614267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.072 3.928 4 H 0.074 0.926 5 C -0.135 4.135 6 C -0.129 4.129 7 C 0.084 3.916 8 H 0.047 0.953 9 C -0.136 4.136 10 N -0.512 5.512 11 C 0.152 3.848 12 C -0.506 4.506 13 H 0.088 0.912 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.869 3.131 17 H -0.277 1.277 18 H -0.268 1.268 19 H -0.287 1.287 20 H 0.048 0.952 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.050 0.950 32 H -0.009 1.009 33 H 0.029 0.971 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.624 4.097 -4.343 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C -0.037 4.037 4 H 0.092 0.908 5 C -0.174 4.174 6 C -0.168 4.168 7 C -0.024 4.024 8 H 0.065 0.935 9 C -0.193 4.193 10 N -0.236 5.236 11 C 0.025 3.975 12 C -0.545 4.545 13 H 0.106 0.894 14 C -0.134 4.134 15 N -0.542 5.542 16 Si 0.697 3.303 17 H -0.202 1.202 18 H -0.193 1.193 19 H -0.213 1.213 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.009 0.991 33 H 0.047 0.953 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.271 4.247 -3.877 12.654 hybrid contribution -0.599 -1.546 -0.862 1.869 sum -11.871 2.701 -4.739 13.064 Atomic orbital electron populations 1.21762 0.96405 1.01002 1.01321 1.22192 0.95148 0.98008 1.02897 1.22454 0.89979 0.94403 0.96835 0.90809 1.22848 0.97908 0.98658 0.97964 1.22808 0.95113 0.98709 1.00130 1.22355 0.94232 0.94825 0.90985 0.93541 1.21817 0.98507 0.99513 0.99473 1.63603 1.03439 1.20610 1.35975 1.20484 0.96659 0.85291 0.95037 1.21240 0.91683 0.95700 1.45831 0.89423 1.24906 0.94722 0.98613 0.95163 1.69892 1.06267 1.28182 1.49875 0.86954 0.79566 0.84784 0.79037 1.20235 1.19263 1.21318 0.93287 0.92882 0.93129 0.92059 0.90749 0.91797 0.91992 0.91194 0.91894 0.90007 0.94373 0.93069 0.99100 0.95306 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.62 37.16 0.36 -1.56 16 2 C -0.14 -2.42 4.07 -26.73 -0.11 -2.53 16 3 C 0.07 1.26 3.50 -66.72 -0.23 1.02 16 4 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 5 C -0.14 -2.00 5.54 -24.91 -0.14 -2.14 16 6 C -0.13 -2.00 6.50 -24.60 -0.16 -2.16 16 7 C 0.08 1.65 2.84 -66.19 -0.19 1.46 16 8 H 0.05 0.98 7.57 -51.93 -0.39 0.59 16 9 C -0.14 -2.64 9.05 37.16 0.34 -2.30 16 10 N -0.51 -10.95 4.81 -216.95 -1.04 -11.99 16 11 C 0.15 3.70 2.58 -4.97 -0.01 3.69 16 12 C -0.51 -14.39 8.79 -34.44 -0.30 -14.69 16 13 H 0.09 2.68 6.01 -52.49 -0.32 2.36 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 16 Si 0.87 21.68 27.58 -169.99 -4.69 17.00 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.45 6.38 56.52 0.36 -6.09 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.61 7.45 -51.92 -0.39 0.22 16 23 H 0.06 1.10 7.12 -51.93 -0.37 0.73 16 24 H 0.07 1.35 6.22 -51.93 -0.32 1.03 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.90 7.72 -51.93 -0.40 0.50 16 27 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.88 5.77 -51.93 -0.30 1.58 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H -0.01 -0.22 5.63 -51.93 -0.29 -0.51 16 33 H 0.03 0.71 5.50 -51.93 -0.29 0.42 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 257.26 15.07 3.88 3.88 Total: -1.00 -29.83 257.26 -7.25 -37.08 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.62 Total: -1.61 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -0.55 Total: -17.36 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: -0.27 Total: -38.98 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.69 Total: 17.00 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.83 -7.25 -37.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124609615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.882 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds