Wall clock time and date at job start Sun Mar 29 2020 21:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47336 * 2 1 4 4 N 1.46904 * 109.47656 * 239.99950 * 2 1 3 5 5 C 1.46897 * 110.99983 * 84.99562 * 4 2 1 6 6 C 1.52999 * 109.47018 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.47060 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99530 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00138 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99853 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00360 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46691 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47359 * 119.99560 * 11 9 7 14 14 H 1.48508 * 109.47133 * 239.99806 * 11 9 7 15 15 C 1.53001 * 109.47069 * 119.99958 * 2 1 3 16 16 C 1.53782 * 113.61321 * 282.76025 * 15 2 1 17 17 C 1.53955 * 87.01861 * 220.04821 * 16 15 2 18 18 C 1.53779 * 87.11218 * 25.36600 * 17 16 15 19 19 H 1.09001 * 109.46795 * 176.85169 * 1 2 3 20 20 H 1.08998 * 109.46934 * 296.85446 * 1 2 3 21 21 H 1.09005 * 109.46959 * 56.85560 * 1 2 3 22 22 H 1.00896 * 111.00569 * 208.95735 * 4 2 1 23 23 H 1.09001 * 109.47063 * 60.00674 * 5 4 2 24 24 H 1.09004 * 109.47393 * 300.00497 * 5 4 2 25 25 H 1.08995 * 109.47212 * 300.00194 * 6 5 4 26 26 H 1.09001 * 109.47091 * 60.00155 * 6 5 4 27 27 H 0.96998 * 120.00063 * 180.02562 * 10 9 7 28 28 H 1.08993 * 112.85275 * 53.96071 * 15 2 1 29 29 H 1.09002 * 113.61401 * 334.56897 * 16 15 2 30 30 H 1.08999 * 113.61257 * 105.47403 * 16 15 2 31 31 H 1.09000 * 113.54160 * 270.80612 * 17 16 15 32 32 H 1.09005 * 113.74084 * 139.94455 * 17 16 15 33 33 H 1.09000 * 113.60979 * 220.08773 * 18 17 16 34 34 H 1.08995 * 113.61789 * 89.18998 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5952 -0.5332 -3.5744 7 6 2.6602 0.4057 -4.7515 8 1 2.3649 1.4381 -4.6356 9 6 3.0956 -0.0535 -5.9764 10 7 3.4547 -1.3108 -6.1175 11 14 3.1754 1.1100 -7.4355 12 1 2.7200 2.4602 -7.0174 13 1 4.5737 1.1896 -7.9292 14 1 2.2955 0.6051 -8.5200 15 6 2.0400 -0.7212 1.2493 16 6 1.9519 0.1267 2.5292 17 6 3.3237 -0.4567 2.9138 18 6 3.5684 -0.6681 1.4104 19 1 -0.3633 -1.0261 -0.0564 20 1 -0.3633 0.4642 0.9168 21 1 -0.3633 0.5619 -0.8605 22 1 2.9174 -1.1205 -1.0287 23 1 2.7589 1.0462 -2.1182 24 1 1.0871 0.6162 -2.5526 25 1 3.5905 -0.9272 -3.3690 26 1 1.9186 -1.3567 -3.8029 27 1 3.7614 -1.6338 -6.9792 28 1 1.6239 -1.7226 1.3594 29 1 1.9705 1.2006 2.3436 30 1 1.1454 -0.1745 3.1977 31 1 3.2585 -1.3855 3.4805 32 1 3.9977 0.2697 3.3680 33 1 4.0651 -1.6099 1.1772 34 1 4.0299 0.1881 0.9185 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164458315.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:16 Heat of formation + Delta-G solvation = -23.701196 kcal Electronic energy + Delta-G solvation = -12489.597923 eV Core-core repulsion = 10421.220766 eV Total energy + Delta-G solvation = -2068.377157 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.23788 -37.15228 -35.09146 -32.56714 -29.76898 -27.00062 -26.19512 -25.59459 -22.47348 -21.72134 -20.23429 -18.51754 -17.13052 -16.49323 -16.28923 -15.84355 -15.42266 -14.56994 -14.23699 -14.00813 -13.41816 -13.31409 -13.04294 -12.92715 -12.85801 -12.64667 -12.41717 -12.33723 -11.79266 -11.50884 -11.35831 -11.30668 -11.01486 -10.84160 -10.58226 -9.25820 -8.21570 -6.33472 1.39496 1.40292 1.53714 2.39768 3.11694 3.27500 3.73452 3.76885 3.94166 4.03667 4.34053 4.38282 4.52889 4.56644 4.70475 4.85814 4.87499 4.90681 4.98130 5.04133 5.08402 5.12789 5.13473 5.34495 5.42629 5.44908 5.63907 5.66781 5.78861 6.15606 6.32485 6.59017 6.83926 7.36025 8.90983 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.064064 B = 0.006250 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.959077 B = 4479.023802 C = 4630.225976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.089 3.911 3 H 0.032 0.968 4 N -0.693 5.693 5 C 0.086 3.914 6 C 0.032 3.968 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.000 4.000 10 N -0.932 5.932 11 Si 0.969 3.031 12 H -0.262 1.262 13 H -0.276 1.276 14 H -0.277 1.277 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.131 4.131 18 C -0.150 4.150 19 H 0.054 0.946 20 H 0.075 0.925 21 H 0.037 0.963 22 H 0.337 0.663 23 H 0.014 0.986 24 H 0.055 0.945 25 H -0.010 1.010 26 H -0.006 1.006 27 H 0.264 0.736 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 3.126 16.341 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.021 4.021 3 H 0.050 0.950 4 N -0.324 5.324 5 C -0.043 4.043 6 C -0.006 4.006 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.198 4.198 10 N -0.572 5.572 11 Si 0.793 3.207 12 H -0.186 1.186 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.128 4.128 16 C -0.164 4.164 17 C -0.169 4.169 18 C -0.187 4.187 19 H 0.073 0.927 20 H 0.094 0.906 21 H 0.056 0.944 22 H 0.155 0.845 23 H 0.032 0.968 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.012 0.988 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.870 2.766 16.058 16.545 hybrid contribution 0.958 0.730 -0.958 1.540 sum -1.912 3.496 15.099 15.616 Atomic orbital electron populations 1.21728 0.94331 1.01852 1.01212 1.21623 0.96262 0.95123 0.89043 0.94978 1.60559 1.33335 1.33870 1.04682 1.21784 0.98790 0.93188 0.90534 1.18925 0.94302 0.95067 0.92269 1.21639 1.44063 0.96907 0.95738 0.92276 1.25995 0.94683 0.96895 1.02179 1.70120 1.45254 1.16422 1.25440 0.85345 0.77965 0.78982 0.78405 1.18614 1.20173 1.20234 1.22721 0.96089 1.00128 0.93883 1.22921 0.98141 0.99376 0.95966 1.22793 0.97198 1.01717 0.95144 1.22974 0.96041 1.01685 0.98049 0.92657 0.90577 0.94388 0.84498 0.96804 0.92659 0.99125 0.98805 0.92685 0.88805 0.90245 0.90125 0.89182 0.90837 0.91575 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.36 71.98 0.67 -2.96 16 2 C 0.09 2.61 2.35 44.91 0.11 2.71 16 3 H 0.03 0.98 7.71 -2.39 -0.02 0.96 16 4 N -0.69 -25.92 6.31 -491.57 -3.10 -29.02 16 5 C 0.09 3.82 5.42 86.30 0.47 4.29 16 6 C 0.03 1.77 5.23 29.85 0.16 1.92 16 7 C -0.55 -32.05 9.11 25.60 0.23 -31.82 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.00 0.02 5.46 84.65 0.46 0.48 16 10 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 11 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 15 C -0.11 -2.56 3.20 -10.27 -0.03 -2.59 16 16 C -0.13 -2.30 7.44 31.18 0.23 -2.07 16 17 C -0.13 -2.29 8.09 31.18 0.25 -2.04 16 18 C -0.15 -3.39 6.75 31.12 0.21 -3.18 16 19 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 20 H 0.08 1.63 7.97 -2.39 -0.02 1.62 16 21 H 0.04 1.13 7.53 -2.38 -0.02 1.11 16 22 H 0.34 12.40 7.59 -89.70 -0.68 11.72 16 23 H 0.01 0.61 8.06 -2.39 -0.02 0.59 16 24 H 0.05 2.46 7.49 -2.38 -0.02 2.45 16 25 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 1.46 8.04 -2.39 -0.02 1.44 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.68 8.10 -2.39 -0.02 1.66 16 Total: -1.00 -64.34 276.54 2.33 -62.01 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.36 Total: 12.94 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 2.76 Total: -35.24 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -2.82 Total: -86.73 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.34 2.33 -62.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164458315.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.306 kcal (2) G-P(sol) polarization free energy of solvation -64.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds