Wall clock time and date at job start Sun Mar 29 2020 21:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 H 1.09004 * 109.46887 * 305.47228 * 3 2 1 5 5 C 1.50693 * 109.46930 * 185.47597 * 3 2 1 6 6 H 1.08005 * 119.99572 * 239.99797 * 5 3 2 7 7 C 1.37877 * 120.00516 * 59.99848 * 5 3 2 8 8 N 1.31515 * 119.99704 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00272 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46922 * 60.00049 * 9 7 5 11 11 H 1.48499 * 109.47175 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47058 * 300.00179 * 9 7 5 13 13 N 1.46908 * 109.47056 * 65.47374 * 3 2 1 14 14 C 1.46898 * 110.99920 * 205.56127 * 13 3 2 15 15 C 1.52999 * 109.46973 * 185.22348 * 14 13 3 16 16 H 1.08993 * 115.55038 * 330.58856 * 15 14 13 17 17 C 1.53001 * 117.49476 * 116.25819 * 15 14 13 18 18 C 1.52999 * 117.49697 * 184.91454 * 15 14 13 19 19 H 1.09001 * 117.50143 * 359.97438 * 18 15 14 20 20 C 1.52994 * 117.49842 * 145.02434 * 18 15 14 21 21 H 1.09004 * 109.46714 * 294.09138 * 1 2 3 22 22 H 1.08998 * 109.47454 * 54.09047 * 1 2 3 23 23 H 1.08998 * 109.46954 * 174.09548 * 1 2 3 24 24 H 1.08997 * 109.46407 * 240.00286 * 2 1 3 25 25 H 1.09001 * 109.47044 * 120.00563 * 2 1 3 26 26 H 0.96993 * 119.99937 * 179.97438 * 8 7 5 27 27 H 1.00901 * 110.99686 * 329.51696 * 13 3 2 28 28 H 1.09001 * 109.47120 * 305.22727 * 14 13 3 29 29 H 1.09008 * 109.46804 * 65.22733 * 14 13 3 30 30 H 1.09006 * 117.49339 * 214.98201 * 17 15 14 31 31 H 1.09003 * 117.49803 * 359.96940 * 17 15 14 32 32 H 1.09001 * 109.47054 * 59.99932 * 20 18 15 33 33 H 1.09002 * 109.47435 * 179.97438 * 20 18 15 34 34 H 1.09000 * 109.47075 * 300.00011 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5989 1.9838 -0.8370 5 6 3.5409 1.4446 -0.1356 6 1 4.1522 1.8871 0.6371 7 6 4.1337 0.8818 -1.2459 8 7 3.3892 0.3434 -2.1870 9 14 5.9940 0.8851 -1.4142 10 1 6.5955 0.1480 -0.2740 11 1 6.3770 0.2251 -2.6882 12 1 6.4885 2.2853 -1.4146 13 7 1.6612 2.0958 1.2601 14 6 1.5681 3.5520 1.0908 15 6 1.3007 4.2071 2.4474 16 1 0.7478 3.5982 3.1626 17 6 2.3724 5.1485 3.0007 18 6 1.0554 5.7171 2.4666 19 1 1.0849 6.2440 1.5129 20 6 0.0531 6.2571 3.4887 21 1 -0.3633 0.4195 0.9382 22 1 -0.3634 0.6027 -0.8323 23 1 -0.3633 -1.0222 -0.1057 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.8062 -0.0522 -2.9682 27 1 0.7971 1.7173 1.6180 28 1 2.5050 3.9310 0.6826 29 1 0.7524 3.7869 0.4069 30 1 2.5242 5.1591 4.0801 31 1 3.2681 5.3007 2.3985 32 1 0.3899 6.0071 4.4948 33 1 -0.0199 7.3400 3.3889 34 1 -0.9243 5.8087 3.3108 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166934478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:14 Heat of formation + Delta-G solvation = 5.596701 kcal Electronic energy + Delta-G solvation = -12660.699387 eV Core-core repulsion = 10593.592682 eV Total energy + Delta-G solvation = -2067.106704 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.88393 -35.83744 -32.30417 -31.03206 -28.50890 -26.71444 -24.39052 -22.46143 -20.67729 -20.10325 -19.25338 -16.23191 -15.11833 -14.86925 -14.30117 -14.07853 -13.48303 -13.09692 -12.68176 -12.43024 -12.09072 -12.03077 -11.45198 -11.19090 -11.15112 -10.86611 -10.69280 -10.59311 -9.93934 -9.90323 -9.67509 -9.52904 -9.28222 -8.97616 -8.30498 -7.13815 -5.92877 -3.96818 3.36521 3.40320 3.44116 4.06683 4.48020 4.85557 5.18308 5.23379 5.35193 5.43003 5.69119 5.87551 5.92353 5.94176 6.09187 6.15007 6.19241 6.19686 6.34828 6.39975 6.46065 6.48463 6.83955 6.88045 7.11976 7.23730 7.54920 7.82241 7.96467 8.37346 8.44791 8.82710 9.11301 9.67942 11.12565 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033097 B = 0.009282 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.783292 B = 3015.965126 C = 3687.571247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.685 5.685 14 C 0.097 3.903 15 C -0.132 4.132 16 H 0.099 0.901 17 C -0.171 4.171 18 C -0.168 4.168 19 H 0.099 0.901 20 C -0.118 4.118 21 H 0.035 0.965 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.099 0.901 25 H 0.041 0.959 26 H 0.259 0.741 27 H 0.315 0.685 28 H 0.074 0.926 29 H 0.016 0.984 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.227 6.571 6.954 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.316 5.316 14 C -0.033 4.033 15 C -0.151 4.151 16 H 0.117 0.883 17 C -0.208 4.208 18 C -0.186 4.186 19 H 0.118 0.882 20 C -0.175 4.175 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.117 0.883 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.092 0.908 29 H 0.034 0.966 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.551 6.490 7.001 10.576 hybrid contribution 0.201 0.025 -0.689 0.718 sum -4.350 6.515 6.312 10.061 Atomic orbital electron populations 1.21882 0.99626 0.99677 0.99543 1.21765 0.91214 1.00373 1.03049 1.19150 0.95426 0.89976 0.84377 0.98187 1.21197 0.91329 1.36358 1.04237 0.92126 1.24965 0.98091 0.95697 0.95857 1.69864 1.34752 1.39580 1.09594 0.86607 0.85824 0.78112 0.77106 1.20301 1.21462 1.20470 1.60648 1.36037 1.01967 1.32933 1.21391 0.99812 0.89966 0.92090 1.22446 1.02175 0.90686 0.99786 0.88276 1.23119 0.92932 1.04388 1.00347 1.22408 0.98603 0.96927 1.00694 0.88243 1.21317 0.98209 1.00269 0.97717 0.94594 0.93929 0.94397 0.88279 0.94040 0.93068 0.86753 0.90791 0.96603 0.89483 0.88869 0.92825 0.92654 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.64 37.16 0.36 -2.60 16 2 C -0.13 -3.01 5.36 -26.73 -0.14 -3.16 16 3 C 0.22 5.55 2.02 -68.86 -0.14 5.41 16 4 H 0.00 0.01 7.85 -51.93 -0.41 -0.39 16 5 C -0.49 -13.87 8.57 -34.44 -0.30 -14.16 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.90 11.29 55.43 0.63 -25.27 16 9 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 N -0.68 -14.98 6.27 -107.95 -0.68 -15.65 16 14 C 0.10 1.91 5.73 -3.83 -0.02 1.88 16 15 C -0.13 -2.12 5.71 -90.62 -0.52 -2.64 16 16 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 17 C -0.17 -2.50 9.83 -26.69 -0.26 -2.76 16 18 C -0.17 -2.28 6.13 -90.59 -0.56 -2.83 16 19 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 20 C -0.12 -1.31 10.19 37.15 0.38 -0.93 16 21 H 0.04 0.63 6.65 -51.93 -0.35 0.29 16 22 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.32 6.29 6.64 -39.29 -0.26 6.03 16 28 H 0.07 1.59 7.67 -51.93 -0.40 1.19 16 29 H 0.02 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 31 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 32 H 0.05 0.57 7.90 -51.93 -0.41 0.15 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 276.88 15.07 4.17 4.17 Total: -1.00 -28.44 276.88 -8.08 -36.52 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.89 Total: 3.81 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.29 Total: -20.36 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.05 Total: -40.93 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.44 -8.08 -36.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166934478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.120 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds