Wall clock time and date at job start Sun Mar 29 2020 21:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 H 1.09004 * 109.46887 * 305.47228 * 3 2 1 5 5 C 1.50693 * 109.46930 * 185.47597 * 3 2 1 6 6 H 1.08005 * 119.99572 * 239.99797 * 5 3 2 7 7 C 1.37877 * 120.00516 * 59.99848 * 5 3 2 8 8 N 1.31515 * 119.99704 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00272 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46922 * 60.00049 * 9 7 5 11 11 H 1.48499 * 109.47175 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47058 * 300.00179 * 9 7 5 13 13 N 1.46908 * 109.47056 * 65.47374 * 3 2 1 14 14 C 1.46898 * 110.99920 * 205.56127 * 13 3 2 15 15 C 1.52999 * 109.46973 * 185.22348 * 14 13 3 16 16 H 1.08993 * 115.55038 * 330.58856 * 15 14 13 17 17 C 1.53001 * 117.49476 * 116.25819 * 15 14 13 18 18 C 1.52999 * 117.49697 * 184.91454 * 15 14 13 19 19 H 1.09001 * 117.50143 * 359.97438 * 18 15 14 20 20 C 1.52994 * 117.49842 * 145.02434 * 18 15 14 21 21 H 1.09004 * 109.46714 * 294.09138 * 1 2 3 22 22 H 1.08998 * 109.47454 * 54.09047 * 1 2 3 23 23 H 1.08998 * 109.46954 * 174.09548 * 1 2 3 24 24 H 1.08997 * 109.46407 * 240.00286 * 2 1 3 25 25 H 1.09001 * 109.47044 * 120.00563 * 2 1 3 26 26 H 0.96993 * 119.99937 * 179.97438 * 8 7 5 27 27 H 1.00901 * 110.99686 * 329.51696 * 13 3 2 28 28 H 1.09001 * 109.47120 * 305.22727 * 14 13 3 29 29 H 1.09008 * 109.46804 * 65.22733 * 14 13 3 30 30 H 1.09006 * 117.49339 * 214.98201 * 17 15 14 31 31 H 1.09003 * 117.49803 * 359.96940 * 17 15 14 32 32 H 1.09001 * 109.47054 * 59.99932 * 20 18 15 33 33 H 1.09002 * 109.47435 * 179.97438 * 20 18 15 34 34 H 1.09000 * 109.47075 * 300.00011 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5989 1.9838 -0.8370 5 6 3.5409 1.4446 -0.1356 6 1 4.1522 1.8871 0.6371 7 6 4.1337 0.8818 -1.2459 8 7 3.3892 0.3434 -2.1870 9 14 5.9940 0.8851 -1.4142 10 1 6.5955 0.1480 -0.2740 11 1 6.3770 0.2251 -2.6882 12 1 6.4885 2.2853 -1.4146 13 7 1.6612 2.0958 1.2601 14 6 1.5681 3.5520 1.0908 15 6 1.3007 4.2071 2.4474 16 1 0.7478 3.5982 3.1626 17 6 2.3724 5.1485 3.0007 18 6 1.0554 5.7171 2.4666 19 1 1.0849 6.2440 1.5129 20 6 0.0531 6.2571 3.4887 21 1 -0.3633 0.4195 0.9382 22 1 -0.3634 0.6027 -0.8323 23 1 -0.3633 -1.0222 -0.1057 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.8062 -0.0522 -2.9682 27 1 0.7971 1.7173 1.6180 28 1 2.5050 3.9310 0.6826 29 1 0.7524 3.7869 0.4069 30 1 2.5242 5.1591 4.0801 31 1 3.2681 5.3007 2.3985 32 1 0.3899 6.0071 4.4948 33 1 -0.0199 7.3400 3.3889 34 1 -0.9243 5.8087 3.3108 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166934478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:14 Heat of formation + Delta-G solvation = -11.261182 kcal Electronic energy + Delta-G solvation = -12661.430399 eV Core-core repulsion = 10593.592682 eV Total energy + Delta-G solvation = -2067.837717 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.22701 -37.59577 -34.32633 -32.77640 -29.70843 -28.53301 -26.10538 -24.28354 -21.93844 -21.63982 -20.87011 -18.37823 -16.80121 -16.53395 -16.01579 -15.63171 -14.98899 -14.58771 -14.19317 -13.87400 -13.69944 -13.20475 -13.09696 -13.01108 -12.74406 -12.56308 -12.29816 -12.13772 -11.98606 -11.56995 -11.48949 -11.13302 -10.79153 -10.52039 -10.43270 -8.98848 -8.07697 -6.20154 1.40549 1.42232 1.50211 2.43077 2.87412 3.16951 3.54440 3.98689 4.02484 4.22180 4.46277 4.48169 4.56088 4.57727 4.66794 4.78657 4.82337 4.98208 5.00528 5.02301 5.10117 5.22045 5.24174 5.36258 5.38090 5.50719 5.59508 5.73943 5.89019 6.35593 6.50940 6.93275 7.01474 7.48911 8.95474 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033097 B = 0.009282 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.783292 B = 3015.965126 C = 3687.571247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.223 3.777 4 H -0.034 1.034 5 C -0.515 4.515 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.957 3.043 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.275 1.275 13 N -0.685 5.685 14 C 0.102 3.898 15 C -0.148 4.148 16 H 0.108 0.892 17 C -0.173 4.173 18 C -0.149 4.149 19 H 0.097 0.903 20 C -0.115 4.115 21 H 0.059 0.941 22 H 0.035 0.965 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.037 0.963 26 H 0.261 0.739 27 H 0.329 0.671 28 H 0.045 0.955 29 H 0.013 0.987 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.663 7.168 8.229 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.115 3.885 4 H -0.016 1.016 5 C -0.554 4.554 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.200 1.200 13 N -0.317 5.317 14 C -0.028 4.028 15 C -0.166 4.166 16 H 0.126 0.874 17 C -0.210 4.210 18 C -0.167 4.167 19 H 0.115 0.885 20 C -0.172 4.172 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.001 7.096 8.290 12.004 hybrid contribution 0.327 -0.135 -1.091 1.147 sum -4.674 6.961 7.199 11.051 Atomic orbital electron populations 1.21750 0.96155 1.01201 1.00529 1.21592 0.94343 0.98790 1.01247 1.18947 0.94068 0.90806 0.84707 1.01643 1.21454 0.92873 1.36723 1.04306 0.93415 1.25703 1.02474 0.95254 0.95496 1.69993 1.36379 1.39819 1.09861 0.85637 0.80574 0.78231 0.77328 1.19766 1.20676 1.20049 1.60547 1.36960 1.03227 1.30937 1.21313 0.98246 0.88753 0.94455 1.22289 1.04199 0.92218 0.97929 0.87375 1.23185 0.92770 1.03775 1.01245 1.22517 0.98329 0.94587 1.01294 0.88489 1.21342 0.97503 1.01252 0.97126 0.92257 0.94591 0.92254 0.91382 0.94405 0.92989 0.85301 0.93633 0.96850 0.87614 0.90180 0.91975 0.90997 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 9.64 71.98 0.69 -4.61 16 2 C -0.12 -5.86 5.36 30.60 0.16 -5.70 16 3 C 0.22 11.61 2.02 44.17 0.09 11.70 16 4 H -0.03 -1.97 7.85 -2.39 -0.02 -1.99 16 5 C -0.51 -29.69 8.57 25.60 0.22 -29.47 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 7 C 0.01 0.50 5.29 84.65 0.45 0.95 16 8 N -0.92 -54.05 11.29 21.45 0.24 -53.81 16 9 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.68 -30.08 6.27 -495.44 -3.11 -33.19 16 14 C 0.10 4.04 5.73 86.30 0.49 4.54 16 15 C -0.15 -4.57 5.71 -10.79 -0.06 -4.63 16 16 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 17 C -0.17 -4.81 9.83 30.62 0.30 -4.51 16 18 C -0.15 -3.75 6.13 -10.77 -0.07 -3.81 16 19 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 20 C -0.12 -2.18 10.19 71.98 0.73 -1.45 16 21 H 0.06 1.97 6.65 -2.38 -0.02 1.95 16 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.07 3.73 5.94 -2.39 -0.01 3.72 16 25 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.33 12.79 6.64 -89.69 -0.60 12.19 16 28 H 0.05 2.03 7.67 -2.39 -0.02 2.01 16 29 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.11 2.54 8.05 -2.38 -0.02 2.52 16 31 H 0.08 2.43 8.03 -2.39 -0.02 2.41 16 32 H 0.06 1.09 7.90 -2.39 -0.02 1.07 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -61.47 276.88 2.63 -58.84 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.45 Total: 18.02 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.02 Total: -36.99 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -2.86 Total: -87.00 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -61.47 2.63 -58.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166934478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.579 kcal (2) G-P(sol) polarization free energy of solvation -61.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds