Wall clock time and date at job start Sun Mar 29 2020 21:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47057 * 2 1 4 4 C 1.50692 * 109.47426 * 239.99582 * 2 1 3 5 5 H 1.08000 * 120.00260 * 269.53359 * 4 2 1 6 6 C 1.37880 * 120.00085 * 89.52653 * 4 2 1 7 7 N 1.31518 * 119.99807 * 352.47690 * 6 4 2 8 8 Si 1.86791 * 120.00243 * 172.47497 * 6 4 2 9 9 H 1.48502 * 109.47375 * 270.00210 * 8 6 4 10 10 H 1.48498 * 109.47288 * 30.00520 * 8 6 4 11 11 H 1.48506 * 109.47378 * 150.00580 * 8 6 4 12 12 N 1.46903 * 109.46904 * 119.99762 * 2 1 3 13 13 C 1.46902 * 110.99829 * 275.00337 * 12 2 1 14 14 H 1.08998 * 110.02007 * 34.93434 * 13 12 2 15 15 C 1.54271 * 110.03280 * 273.54555 * 13 12 2 16 16 C 1.54881 * 104.19573 * 217.10685 * 15 13 12 17 17 C 1.54893 * 102.75035 * 37.94308 * 16 15 13 18 18 C 1.53877 * 110.03328 * 156.38035 * 13 12 2 19 19 H 1.08991 * 110.03170 * 238.56851 * 18 13 12 20 20 C 1.53004 * 110.02977 * 359.97438 * 18 13 12 21 21 H 1.09001 * 109.46791 * 181.68256 * 1 2 3 22 22 H 1.08999 * 109.47483 * 301.68507 * 1 2 3 23 23 H 1.09000 * 109.46949 * 61.68550 * 1 2 3 24 24 H 0.96999 * 120.00088 * 354.57141 * 7 6 4 25 25 H 1.00895 * 110.99737 * 151.04800 * 12 2 1 26 26 H 1.09004 * 110.48276 * 335.78667 * 15 13 12 27 27 H 1.09002 * 110.48654 * 98.29069 * 15 13 12 28 28 H 1.09002 * 110.75368 * 156.25596 * 16 15 13 29 29 H 1.09003 * 110.75992 * 279.43907 * 16 15 13 30 30 H 1.09002 * 110.48759 * 80.73307 * 17 16 15 31 31 H 1.09003 * 110.48689 * 203.24472 * 17 16 15 32 32 H 1.09000 * 109.47200 * 59.99714 * 20 18 13 33 33 H 1.08997 * 109.46995 * 179.97438 * 20 18 13 34 34 H 1.09000 * 109.46915 * 300.00196 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.2197 -1.7737 -1.2014 6 6 2.2530 -0.0031 -2.3931 7 7 1.8872 1.2575 -2.4754 8 14 3.0714 -0.8352 -3.8516 9 1 4.5432 -0.6603 -3.7595 10 1 2.7435 -2.2835 -3.8433 11 1 2.5781 -0.2232 -5.1116 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2615 0.9382 2.2989 15 6 3.4331 0.9680 2.3553 16 6 3.7983 1.0754 3.8566 17 6 3.3224 -0.2856 4.4224 18 6 2.0120 -0.5743 3.6613 19 1 1.1570 -0.2457 4.2519 20 6 1.8982 -2.0704 3.3616 21 1 -0.3633 -1.0273 0.0302 22 1 -0.3634 0.5398 0.8745 23 1 -0.3633 0.4874 -0.9047 24 1 1.3923 1.6673 -1.7487 25 1 2.9173 -1.1204 1.0288 26 1 4.1887 0.3941 1.8189 27 1 3.3246 1.9592 1.9150 28 1 4.8745 1.1921 3.9849 29 1 3.2631 1.9007 4.3263 30 1 4.0602 -1.0620 4.2199 31 1 3.1348 -0.2089 5.4935 32 1 2.7695 -2.3942 2.7923 33 1 1.8495 -2.6259 4.2981 34 1 0.9949 -2.2568 2.7807 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216233088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:24 Heat of formation + Delta-G solvation = -26.755464 kcal Electronic energy + Delta-G solvation = -13181.943797 eV Core-core repulsion = 11113.434198 eV Total energy + Delta-G solvation = -2068.509600 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.60082 -34.98933 -32.00599 -30.77289 -28.75012 -25.95269 -24.78346 -24.07340 -20.65971 -20.18795 -18.50804 -17.03743 -15.48434 -14.85391 -14.18311 -13.71473 -13.41448 -13.08659 -12.77846 -12.48330 -11.88630 -11.62654 -11.18131 -10.99824 -10.87436 -10.67762 -10.61549 -10.42201 -10.31253 -10.16135 -10.09484 -10.09094 -9.83113 -8.51059 -8.31849 -7.21185 -6.36701 -4.08477 3.43108 3.46352 3.62495 4.52148 4.93209 4.95908 5.06885 5.32885 5.54244 5.65706 5.79534 5.89554 5.91610 5.96195 6.02754 6.13460 6.26671 6.32652 6.45309 6.56176 6.60031 6.65316 6.76650 6.85083 6.93196 7.01591 7.14043 7.60614 7.96249 8.17813 8.61950 8.66549 8.90021 9.66081 11.01139 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045600 B = 0.009482 C = 0.009218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.882949 B = 2952.355454 C = 3036.657719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.192 3.808 3 H 0.006 0.994 4 C -0.597 4.597 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 1.069 2.931 9 H -0.289 1.289 10 H -0.288 1.288 11 H -0.286 1.286 12 N -0.675 5.675 13 C 0.086 3.914 14 H 0.067 0.933 15 C -0.150 4.150 16 C -0.123 4.123 17 C -0.120 4.120 18 C -0.088 4.088 19 H 0.061 0.939 20 C -0.118 4.118 21 H 0.042 0.958 22 H 0.013 0.987 23 H 0.042 0.958 24 H 0.270 0.730 25 H 0.335 0.665 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.030 0.970 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 -2.132 10.683 11.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.024 0.976 4 C -0.636 4.636 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.548 5.548 8 Si 0.898 3.102 9 H -0.215 1.215 10 H -0.214 1.214 11 H -0.212 1.212 12 N -0.305 5.305 13 C -0.025 4.025 14 H 0.085 0.915 15 C -0.189 4.189 16 C -0.161 4.161 17 C -0.158 4.158 18 C -0.107 4.107 19 H 0.079 0.921 20 C -0.176 4.176 21 H 0.061 0.939 22 H 0.032 0.968 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.154 0.846 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.139 -2.119 9.289 9.765 hybrid contribution 0.148 0.394 1.285 1.353 sum 2.287 -1.725 10.574 10.955 Atomic orbital electron populations 1.21802 0.98994 0.99565 0.97660 1.19286 0.91463 0.93154 0.87727 0.97606 1.22049 1.48402 0.96560 0.96580 0.92721 1.25819 0.96186 0.95702 1.00693 1.70752 1.36076 1.12508 1.35434 0.83549 0.76211 0.74859 0.75610 1.21530 1.21419 1.21185 1.60873 1.32416 1.32026 1.05184 1.22184 0.95335 0.93081 0.91931 0.91472 1.23110 0.98960 1.01095 0.95751 1.22421 1.00004 0.97335 0.96323 1.22457 0.97550 0.97091 0.98656 1.21770 0.96506 0.96890 0.95565 0.92058 1.21494 1.03166 0.93963 0.98980 0.93910 0.96827 0.93934 0.91869 0.84607 0.91571 0.92313 0.92316 0.92040 0.91820 0.92507 0.92880 0.95068 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 9.28 37.16 0.34 -2.56 16 2 C 0.19 4.81 2.08 -68.86 -0.14 4.66 16 3 H 0.01 0.17 6.55 -51.93 -0.34 -0.17 16 4 C -0.60 -16.59 8.28 -34.44 -0.29 -16.87 16 5 H 0.05 1.54 7.83 -52.49 -0.41 1.13 16 6 C 0.02 0.59 5.44 -17.82 -0.10 0.49 16 7 N -0.91 -27.41 13.55 55.43 0.75 -26.66 16 8 Si 1.07 25.20 29.91 -169.99 -5.08 20.12 16 9 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.67 -14.30 4.26 -99.78 -0.43 -14.73 16 13 C 0.09 1.57 3.00 -66.59 -0.20 1.37 16 14 H 0.07 1.31 7.18 -51.93 -0.37 0.94 16 15 C -0.15 -2.56 6.29 -25.07 -0.16 -2.72 16 16 C -0.12 -1.69 6.91 -24.74 -0.17 -1.86 16 17 C -0.12 -1.60 6.36 -25.07 -0.16 -1.76 16 18 C -0.09 -1.35 3.50 -89.50 -0.31 -1.66 16 19 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 20 C -0.12 -1.82 8.06 37.16 0.30 -1.52 16 21 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.01 0.28 7.47 -51.93 -0.39 -0.11 16 23 H 0.04 1.06 7.75 -51.93 -0.40 0.66 16 24 H 0.27 8.12 6.45 -40.82 -0.26 7.85 16 25 H 0.34 7.23 7.25 -39.29 -0.28 6.94 16 26 H 0.07 1.19 7.58 -51.93 -0.39 0.80 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.84 7.84 -51.93 -0.41 0.43 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.84 7.44 -51.93 -0.39 0.45 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 1.13 7.81 -51.93 -0.41 0.72 16 LS Contribution 266.37 15.07 4.01 4.01 Total: -1.00 -28.61 266.37 -7.44 -36.04 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.81 Total: 3.64 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -0.88 Total: -22.44 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.33 Total: -41.38 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.61 -7.44 -36.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216233088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.289 kcal (2) G-P(sol) polarization free energy of solvation -28.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds