Wall clock time and date at job start Sun Mar 29 2020 21:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47348 * 2 1 4 4 C 1.50696 * 109.46733 * 240.00289 * 2 1 3 5 5 H 1.08009 * 119.99759 * 240.00251 * 4 2 1 6 6 C 1.37874 * 120.00515 * 60.00025 * 4 2 1 7 7 N 1.31513 * 120.00065 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00147 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47451 * 60.00354 * 8 6 4 10 10 H 1.48504 * 109.47165 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47558 * 299.99823 * 8 6 4 12 12 N 1.46900 * 109.46941 * 120.00041 * 2 1 3 13 13 C 1.46890 * 111.00276 * 274.99628 * 12 2 1 14 14 H 1.09007 * 110.02055 * 326.39891 * 13 12 2 15 15 C 1.53877 * 110.03183 * 87.83489 * 13 12 2 16 16 C 1.54469 * 106.68747 * 119.44700 * 15 13 12 17 17 C 1.54890 * 104.09645 * 23.33903 * 16 15 13 18 18 H 1.09002 * 110.75346 * 80.71671 * 17 16 15 19 19 C 1.53006 * 110.75488 * 203.89448 * 17 16 15 20 20 C 1.54265 * 110.03612 * 205.00045 * 13 12 2 21 21 H 1.09006 * 109.46949 * 59.99904 * 1 2 3 22 22 H 1.09002 * 109.47348 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46702 * 300.00019 * 1 2 3 24 24 H 0.96991 * 120.00478 * 180.02562 * 7 6 4 25 25 H 1.00904 * 110.99696 * 151.04397 * 12 2 1 26 26 H 1.09006 * 110.03358 * 238.57369 * 15 13 12 27 27 H 1.08996 * 110.03328 * 359.94963 * 15 13 12 28 28 H 1.09001 * 110.40186 * 264.76026 * 16 15 13 29 29 H 1.08995 * 110.66360 * 142.05277 * 16 15 13 30 30 H 1.08998 * 109.47007 * 176.06836 * 19 17 16 31 31 H 1.08996 * 109.47351 * 296.07277 * 19 17 16 32 32 H 1.08999 * 109.46680 * 56.06976 * 19 17 16 33 33 H 1.09005 * 110.48368 * 98.42679 * 20 13 12 34 34 H 1.08996 * 110.60128 * 335.84274 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.8279 -2.5197 -4.0083 10 1 1.8278 -0.4191 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3468 14 1 2.3403 1.2266 2.0098 15 6 0.7296 0.2426 3.0797 16 6 0.9988 -0.2426 4.5213 17 6 2.5032 0.0515 4.7436 18 1 2.6583 1.1002 4.9975 19 6 3.0786 -0.8582 5.8310 20 6 3.1278 -0.2778 3.3651 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7089 1.1615 -3.4843 25 1 2.9173 -1.1206 1.0287 26 1 0.3304 1.2568 3.0988 27 1 0.0262 -0.4258 2.5834 28 1 0.8026 -1.3115 4.6053 29 1 0.3916 0.3149 5.2344 30 1 4.1506 -0.6830 5.9215 31 1 2.5930 -0.6397 6.7820 32 1 2.9020 -1.9001 5.5638 33 1 4.0706 0.2541 3.2366 34 1 3.2800 -1.3522 3.2621 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228624055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:27 Heat of formation + Delta-G solvation = -41.737907 kcal Electronic energy + Delta-G solvation = -12914.097828 eV Core-core repulsion = 10844.938541 eV Total energy + Delta-G solvation = -2069.159287 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.72495 -36.80317 -34.25146 -31.49212 -30.49729 -27.92454 -27.29836 -25.24703 -22.05159 -20.97799 -20.49108 -18.47163 -17.00669 -16.79472 -15.97707 -15.42064 -14.94625 -14.43150 -14.30243 -13.91320 -13.35141 -13.19938 -12.83252 -12.72450 -12.69638 -12.47137 -12.15765 -11.99552 -11.70576 -11.60554 -11.56303 -11.31155 -11.17899 -10.81492 -10.55206 -9.05725 -8.13814 -6.29020 1.41134 1.43524 1.51221 2.40677 3.13875 3.61034 3.73026 3.79860 4.13405 4.44653 4.58778 4.62577 4.74320 4.75878 4.79930 4.86173 4.98513 5.08501 5.14419 5.18410 5.21998 5.26299 5.29522 5.39881 5.41423 5.55328 5.62343 5.70418 5.89321 6.22362 6.50368 6.81403 7.02634 7.41764 8.91549 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.068077 B = 0.007820 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.199047 B = 3579.771457 C = 3829.771179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.216 3.784 3 H -0.037 1.037 4 C -0.542 4.542 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.679 5.679 13 C 0.076 3.924 14 H 0.013 0.987 15 C -0.115 4.115 16 C -0.108 4.108 17 C -0.091 4.091 18 H 0.077 0.923 19 C -0.137 4.137 20 C -0.115 4.115 21 H 0.052 0.948 22 H 0.025 0.975 23 H 0.028 0.972 24 H 0.263 0.737 25 H 0.331 0.669 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -1.900 13.025 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 H -0.019 1.019 4 C -0.580 4.580 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.310 5.310 13 C -0.034 4.034 14 H 0.031 0.969 15 C -0.154 4.154 16 C -0.145 4.145 17 C -0.110 4.110 18 H 0.095 0.905 19 C -0.194 4.194 20 C -0.153 4.153 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.148 0.852 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.112 -2.025 13.050 13.374 hybrid contribution 0.833 0.468 -1.511 1.788 sum 2.945 -1.558 11.539 12.010 Atomic orbital electron populations 1.21608 0.97745 0.98639 0.99161 1.18955 0.92848 0.90323 0.87099 1.01937 1.21616 1.31820 1.12767 0.91782 0.92254 1.25780 0.95146 0.95689 1.02171 1.70028 1.37478 1.24106 1.24246 0.85510 0.78733 0.78637 0.78120 1.19571 1.20836 1.19513 1.60838 1.31828 1.33053 1.05265 1.22283 0.96310 0.93180 0.91640 0.96932 1.22283 0.96712 1.00149 0.96233 1.22399 0.96182 1.01167 0.94799 1.22042 0.94757 1.00175 0.94011 0.90471 1.21713 1.00887 0.98975 0.97837 1.22589 0.96927 1.01382 0.94363 0.92894 0.95591 0.95279 0.92825 0.85195 0.93164 0.92291 0.91560 0.90542 0.92170 0.91515 0.92777 0.91865 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.89 8.60 71.98 0.62 -5.27 16 2 C 0.22 11.54 2.60 44.17 0.11 11.65 16 3 H -0.04 -2.19 7.43 -2.39 -0.02 -2.21 16 4 C -0.54 -30.73 8.59 25.60 0.22 -30.51 16 5 H 0.06 3.27 7.62 -2.91 -0.02 3.25 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -54.41 11.32 21.45 0.24 -54.17 16 8 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.68 -30.09 6.01 -469.61 -2.82 -32.91 16 13 C 0.08 2.84 3.25 45.64 0.15 2.99 16 14 H 0.01 0.53 7.44 -2.38 -0.02 0.51 16 15 C -0.12 -3.89 5.26 31.39 0.17 -3.72 16 16 C -0.11 -2.74 6.30 31.74 0.20 -2.54 16 17 C -0.09 -2.13 3.48 -9.50 -0.03 -2.16 16 18 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 19 C -0.14 -2.53 9.27 71.98 0.67 -1.87 16 20 C -0.11 -3.31 5.70 31.67 0.18 -3.13 16 21 H 0.05 3.01 6.07 -2.38 -0.01 2.99 16 22 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.03 1.35 6.02 -2.38 -0.01 1.33 16 24 H 0.26 14.73 8.31 -92.71 -0.77 13.95 16 25 H 0.33 14.27 7.81 -89.69 -0.70 13.56 16 26 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.06 2.23 6.57 -2.39 -0.02 2.22 16 28 H 0.07 1.67 8.04 -2.39 -0.02 1.65 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.07 2.12 7.87 -2.39 -0.02 2.10 16 Total: -1.00 -61.04 264.85 2.53 -58.51 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.35 Total: 15.79 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 2.73 Total: -33.49 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -2.58 Total: -87.08 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -61.04 2.53 -58.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228624055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.777 kcal (2) G-P(sol) polarization free energy of solvation -61.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds