Wall clock time and date at job start Sun Mar 29 2020 21:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47168 * 2 1 4 4 H 1.09003 * 109.47421 * 304.86668 * 3 2 1 5 5 C 1.50703 * 109.47182 * 184.86508 * 3 2 1 6 6 H 1.07993 * 120.00127 * 245.46189 * 5 3 2 7 7 C 1.37881 * 119.99754 * 65.46123 * 5 3 2 8 8 N 1.31512 * 119.99850 * 193.39944 * 7 5 3 9 9 Si 1.86800 * 120.00065 * 13.40271 * 7 5 3 10 10 H 1.48497 * 109.47176 * 84.66526 * 9 7 5 11 11 H 1.48501 * 109.47154 * 204.67128 * 9 7 5 12 12 H 1.48501 * 109.46972 * 324.66557 * 9 7 5 13 13 N 1.46900 * 109.47299 * 64.86910 * 3 2 1 14 14 C 1.46902 * 111.00048 * 206.28613 * 13 3 2 15 15 C 1.53001 * 112.84902 * 53.43353 * 14 13 3 16 16 C 1.53775 * 113.61400 * 282.12394 * 14 13 3 17 17 C 1.53777 * 87.08227 * 220.01786 * 16 14 13 18 18 C 1.53780 * 113.61400 * 184.62664 * 14 13 3 19 19 H 1.09000 * 109.47296 * 64.61863 * 1 2 3 20 20 H 1.08999 * 109.47441 * 184.62299 * 1 2 3 21 21 H 1.09002 * 109.46835 * 304.62520 * 1 2 3 22 22 H 1.08998 * 109.47104 * 239.99821 * 2 1 3 23 23 H 1.09000 * 109.47075 * 120.00136 * 2 1 3 24 24 H 0.97001 * 119.99968 * 180.02562 * 8 7 5 25 25 H 1.00895 * 111.00041 * 82.33049 * 13 3 2 26 26 H 1.08995 * 109.47626 * 58.51066 * 15 14 13 27 27 H 1.09003 * 109.47081 * 178.51758 * 15 14 13 28 28 H 1.09010 * 109.46937 * 298.51257 * 15 14 13 29 29 H 1.08999 * 113.61521 * 334.57138 * 16 14 13 30 30 H 1.09003 * 113.61539 * 105.47267 * 16 14 13 31 31 H 1.09002 * 113.61901 * 270.88871 * 17 16 14 32 32 H 1.09000 * 113.61642 * 139.98019 * 17 16 14 33 33 H 1.09000 * 113.61217 * 254.53121 * 18 14 13 34 34 H 1.09000 * 113.61550 * 25.42718 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6073 1.9809 -0.8432 5 6 3.5422 1.4442 -0.1205 6 1 4.1489 1.8090 0.6950 7 6 4.1419 0.9800 -1.2720 8 7 5.4334 0.7323 -1.2868 9 14 3.1200 0.7029 -2.8110 10 1 2.9899 1.9812 -3.5555 11 1 3.7865 -0.3063 -3.6727 12 1 1.7713 0.2135 -2.4280 13 7 1.6487 2.1002 1.2539 14 6 1.5406 3.5542 1.0742 15 6 0.6217 3.9428 -0.0857 16 6 2.8988 4.2751 1.0548 17 6 2.2327 5.3853 1.8846 18 6 1.2438 4.3155 2.3769 19 1 -0.3634 0.4405 -0.9285 20 1 -0.3634 -1.0243 0.0828 21 1 -0.3633 0.5839 0.8457 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 5.8554 0.4060 -2.0970 25 1 2.2929 1.8746 1.9969 26 1 -0.3735 3.5329 0.0860 27 1 0.5607 5.0291 -0.1528 28 1 1.0234 3.5434 -1.0171 29 1 3.6841 3.7414 1.5900 30 1 3.2073 4.5986 0.0606 31 1 1.7682 6.1638 1.2795 32 1 2.8716 5.7848 2.6722 33 1 0.2161 4.6715 2.4501 34 1 1.5765 3.7928 3.2737 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228850827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:53 Heat of formation + Delta-G solvation = -6.325890 kcal Electronic energy + Delta-G solvation = -13470.059225 eV Core-core repulsion = 11402.435518 eV Total energy + Delta-G solvation = -2067.623707 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.54242 -36.99531 -34.09654 -32.17123 -29.68952 -28.48306 -26.36919 -24.67607 -23.31252 -21.19802 -19.56108 -18.67047 -17.13066 -16.72548 -15.93068 -15.33528 -14.98010 -14.74735 -14.02803 -13.75283 -13.55697 -13.31415 -13.03667 -12.94617 -12.86423 -12.52992 -12.21291 -12.02916 -11.73555 -11.56880 -11.35910 -11.18379 -11.07108 -10.68530 -10.51872 -8.88823 -8.28765 -6.26926 1.32415 1.36107 1.44990 2.35586 3.06965 3.54029 3.87039 3.95374 4.03724 4.16479 4.47896 4.61741 4.69204 4.76905 4.81558 4.87887 4.97431 5.00870 5.05869 5.13678 5.24709 5.28468 5.29438 5.43525 5.44876 5.55757 5.59979 5.67570 5.78736 6.21167 6.53325 6.75541 6.90773 7.39501 8.87619 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033263 B = 0.014415 C = 0.012102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.567169 B = 1941.992156 C = 2313.035045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C 0.188 3.812 4 H 0.035 0.965 5 C -0.531 4.531 6 H 0.033 0.967 7 C 0.017 3.983 8 N -0.947 5.947 9 Si 0.916 3.084 10 H -0.278 1.278 11 H -0.293 1.293 12 H -0.219 1.219 13 N -0.660 5.660 14 C 0.090 3.910 15 C -0.121 4.121 16 C -0.163 4.163 17 C -0.130 4.130 18 C -0.115 4.115 19 H 0.040 0.960 20 H 0.051 0.949 21 H 0.067 0.933 22 H 0.039 0.961 23 H 0.042 0.958 24 H 0.261 0.739 25 H 0.329 0.671 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.283 5.859 3.379 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.155 4.155 3 C 0.078 3.922 4 H 0.053 0.947 5 C -0.570 4.570 6 H 0.051 0.949 7 C -0.180 4.180 8 N -0.587 5.587 9 Si 0.741 3.259 10 H -0.204 1.204 11 H -0.220 1.220 12 H -0.142 1.142 13 N -0.287 5.287 14 C -0.002 4.002 15 C -0.178 4.178 16 C -0.203 4.203 17 C -0.168 4.168 18 C -0.153 4.153 19 H 0.059 0.941 20 H 0.070 0.930 21 H 0.086 0.914 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.146 0.854 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.852 5.665 3.184 13.517 hybrid contribution 1.724 -0.139 -0.988 1.992 sum -10.127 5.525 2.196 11.744 Atomic orbital electron populations 1.21633 0.95043 1.00846 1.01492 1.21835 0.95994 0.97962 0.99692 1.19410 0.91048 0.91799 0.89896 0.94707 1.22015 0.92793 1.40928 1.01224 0.94892 1.25759 0.95586 0.94552 1.02128 1.70122 1.12656 1.46943 1.29017 0.86390 0.81909 0.78029 0.79558 1.20409 1.21969 1.14223 1.60677 1.53279 1.07435 1.07355 1.22325 0.94041 0.87226 0.96578 1.21574 0.98931 1.01401 0.95904 1.23519 0.98317 0.99194 0.99246 1.22783 0.98361 0.96182 0.99438 1.22969 1.00042 0.96086 0.96209 0.94063 0.92980 0.91443 0.94214 0.93911 0.92992 0.85416 0.91106 0.90584 0.94273 0.92978 0.94306 0.88977 0.91052 0.89756 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.85 71.98 0.71 -3.82 16 2 C -0.12 -4.93 4.94 30.59 0.15 -4.77 16 3 C 0.19 8.48 1.41 44.17 0.06 8.54 16 4 H 0.04 1.61 4.15 -2.39 -0.01 1.60 16 5 C -0.53 -29.36 8.01 25.60 0.21 -29.16 16 6 H 0.03 2.03 7.08 -2.91 -0.02 2.01 16 7 C 0.02 1.00 5.36 84.66 0.45 1.46 16 8 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 9 Si 0.92 43.67 25.86 68.60 1.77 45.44 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.22 -9.43 5.33 99.48 0.53 -8.90 16 13 N -0.66 -25.77 5.57 -449.51 -2.51 -28.28 16 14 C 0.09 3.08 1.21 4.05 0.00 3.09 16 15 C -0.12 -3.76 8.66 71.98 0.62 -3.14 16 16 C -0.16 -6.02 6.22 31.12 0.19 -5.83 16 17 C -0.13 -3.50 7.73 31.12 0.24 -3.26 16 18 C -0.12 -3.12 7.43 31.12 0.23 -2.89 16 19 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 20 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.07 2.22 7.62 -2.39 -0.02 2.20 16 22 H 0.04 1.77 4.71 -2.39 -0.01 1.76 16 23 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 25 H 0.33 13.49 8.27 -89.70 -0.74 12.75 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.08 1.97 7.30 -2.39 -0.02 1.95 16 28 H 0.04 1.39 6.21 -2.38 -0.01 1.38 16 29 H 0.05 2.19 7.36 -2.39 -0.02 2.18 16 30 H 0.04 1.57 8.10 -2.39 -0.02 1.55 16 31 H 0.09 2.16 7.60 -2.39 -0.02 2.14 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.93 8.10 -2.39 -0.02 1.91 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -62.20 259.45 2.59 -59.61 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.15 Total: 22.10 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 2.88 Total: -39.78 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -2.21 Total: -87.37 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.77 Total: 45.44 kcal Total: -62.20 2.59 -59.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228850827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.281 kcal (2) G-P(sol) polarization free energy of solvation -62.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds