Wall clock time and date at job start Sun Mar 29 2020 21:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 C 1.52993 * 109.47453 * 120.00313 * 2 1 3 5 5 C 1.52991 * 109.47232 * 184.99971 * 4 2 1 6 6 C 1.53791 * 113.61502 * 272.49870 * 5 4 2 7 7 C 1.53779 * 87.07979 * 220.01831 * 6 5 4 8 8 C 1.53779 * 87.08551 * 25.43251 * 7 6 5 9 9 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 10 10 C 1.46902 * 110.99800 * 84.99600 * 9 2 1 11 11 C 1.50706 * 109.46577 * 180.02562 * 10 9 2 12 12 H 1.07995 * 120.00167 * 359.72326 * 11 10 9 13 13 C 1.37879 * 119.99394 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99350 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47353 * 89.99430 * 15 13 11 17 17 H 1.48494 * 109.47031 * 209.99977 * 15 13 11 18 18 H 1.48504 * 109.46680 * 329.99678 * 15 13 11 19 19 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 21 21 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 22 22 H 1.08997 * 109.47176 * 305.00136 * 4 2 1 23 23 H 1.09010 * 109.46538 * 65.00001 * 4 2 1 24 24 H 1.09000 * 112.85110 * 43.80150 * 5 4 2 25 25 H 1.08993 * 113.61216 * 334.56764 * 6 5 4 26 26 H 1.08998 * 113.60918 * 105.47249 * 6 5 4 27 27 H 1.09001 * 113.61426 * 270.88320 * 7 6 5 28 28 H 1.09001 * 113.61356 * 139.98484 * 7 6 5 29 29 H 1.08996 * 113.61537 * 220.02057 * 8 7 6 30 30 H 1.09006 * 113.68985 * 89.12185 * 8 7 6 31 31 H 1.00891 * 110.99988 * 208.95015 * 9 2 1 32 32 H 1.09000 * 109.47263 * 60.00269 * 10 9 2 33 33 H 1.09001 * 109.47582 * 299.99548 * 10 9 2 34 34 H 0.97005 * 119.99656 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.2944 -1.7316 0.5505 7 6 5.2974 -1.7646 1.7157 8 6 4.1705 -1.2027 2.5984 9 7 2.0197 -0.6924 -1.1996 10 6 2.0824 0.2229 -2.3469 11 6 2.5873 -0.5215 -3.5562 12 1 2.8408 -1.5684 -3.4788 13 6 2.7313 0.1358 -4.7596 14 7 3.1723 -0.5137 -5.8147 15 14 2.3014 1.9488 -4.8911 16 1 3.5029 2.7660 -4.5846 17 1 1.8372 2.2487 -6.2694 18 1 1.2223 2.2730 -3.9238 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.6055 -0.2619 2.1369 23 1 1.7517 -1.7716 1.2053 24 1 3.9287 0.3869 1.0781 25 1 3.7097 -2.6461 0.4517 26 1 4.7314 -1.4034 -0.3926 27 1 6.1360 -1.0797 1.5895 28 1 5.6098 -2.7710 1.9945 29 1 4.5075 -0.4475 3.3085 30 1 3.5511 -1.9716 3.0602 31 1 2.9173 -1.1203 -1.0290 32 1 2.7588 1.0465 -2.1182 33 1 1.0870 0.6166 -2.5526 34 1 3.2741 -0.0513 -6.6614 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229672326.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:07 Heat of formation + Delta-G solvation = -18.635044 kcal Electronic energy + Delta-G solvation = -12826.001504 eV Core-core repulsion = 10757.844033 eV Total energy + Delta-G solvation = -2068.157472 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.21420 -37.50930 -34.91470 -32.54286 -29.24181 -28.49189 -26.43920 -24.28609 -23.14624 -21.29216 -20.15064 -18.93690 -17.08820 -16.63799 -16.11680 -15.73216 -15.52428 -14.62843 -14.37760 -13.91150 -13.75870 -13.29140 -13.16530 -12.98533 -12.84849 -12.66147 -12.42180 -11.98746 -11.76790 -11.76090 -11.41555 -11.36394 -10.99116 -10.83905 -10.74168 -9.10385 -8.32623 -6.36748 1.30867 1.33244 1.44959 2.31452 3.01016 3.51880 3.66838 3.77913 3.85850 4.01463 4.22632 4.33819 4.56701 4.67557 4.75642 4.83530 4.90622 4.91636 4.96173 4.98221 5.04962 5.09219 5.10708 5.19086 5.28998 5.40277 5.45086 5.57599 5.65810 6.00170 6.61702 6.66956 6.83732 7.28601 8.84227 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037703 B = 0.009229 C = 0.008123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.468428 B = 3033.262548 C = 3446.011084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.071 3.929 3 H 0.027 0.973 4 C -0.100 4.100 5 C -0.120 4.120 6 C -0.152 4.152 7 C -0.137 4.137 8 C -0.120 4.120 9 N -0.691 5.691 10 C 0.176 3.824 11 C -0.528 4.528 12 H 0.036 0.964 13 C 0.008 3.992 14 N -0.946 5.946 15 Si 0.950 3.050 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.253 1.253 19 H 0.056 0.944 20 H 0.078 0.922 21 H 0.033 0.967 22 H 0.090 0.910 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.341 0.659 32 H -0.022 1.022 33 H 0.023 0.977 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 2.150 17.408 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.038 4.038 3 H 0.045 0.955 4 C -0.138 4.138 5 C -0.138 4.138 6 C -0.190 4.190 7 C -0.174 4.174 8 C -0.157 4.157 9 N -0.326 5.326 10 C 0.047 3.953 11 C -0.566 4.566 12 H 0.054 0.946 13 C -0.189 4.189 14 N -0.586 5.586 15 Si 0.773 3.227 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.177 1.177 19 H 0.075 0.925 20 H 0.097 0.903 21 H 0.052 0.948 22 H 0.108 0.892 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.162 0.838 32 H -0.005 1.005 33 H 0.041 0.959 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.902 1.913 17.066 17.197 hybrid contribution 0.780 1.050 -0.758 1.512 sum -0.122 2.963 16.308 16.575 Atomic orbital electron populations 1.21764 0.94406 1.01967 1.01077 1.21728 0.96332 0.95459 0.90329 0.95519 1.21699 0.94425 1.01138 0.96516 1.22617 0.94946 0.98118 0.98149 1.23071 0.99152 0.99371 0.97415 1.22803 0.96772 1.01881 0.95985 1.22860 0.97097 1.00459 0.95316 1.60559 1.34111 1.33680 1.04208 1.19754 0.94868 0.91111 0.89567 1.21346 1.43377 0.97312 0.94584 0.94600 1.25879 0.94470 1.03504 0.95065 1.70054 1.48019 1.38883 1.01690 0.85671 0.79681 0.79271 0.78054 1.19105 1.20256 1.17673 0.92463 0.90326 0.94782 0.89202 0.91226 0.90644 0.90027 0.93793 0.90245 0.90544 0.90490 0.89043 0.83780 1.00465 0.95943 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.42 71.98 0.68 -3.39 16 2 C 0.07 2.38 2.64 44.91 0.12 2.50 16 3 H 0.03 0.93 7.80 -2.38 -0.02 0.91 16 4 C -0.10 -2.58 4.73 30.59 0.14 -2.43 16 5 C -0.12 -3.04 3.42 -10.26 -0.04 -3.07 16 6 C -0.15 -4.27 5.63 31.12 0.18 -4.09 16 7 C -0.14 -2.96 8.08 31.12 0.25 -2.71 16 8 C -0.12 -2.33 7.64 31.12 0.24 -2.09 16 9 N -0.69 -29.79 6.30 -495.54 -3.12 -32.91 16 10 C 0.18 8.89 4.31 85.56 0.37 9.26 16 11 C -0.53 -31.90 9.87 25.60 0.25 -31.65 16 12 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 13 C 0.01 0.50 5.47 84.66 0.46 0.97 16 14 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 15 Si 0.95 45.45 27.47 68.60 1.88 47.34 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 19 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 21 H 0.03 1.14 7.45 -2.39 -0.02 1.13 16 22 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.07 1.82 7.84 -2.38 -0.02 1.81 16 24 H 0.08 2.06 8.13 -2.39 -0.02 2.04 16 25 H 0.08 2.31 7.90 -2.39 -0.02 2.30 16 26 H 0.04 1.46 7.54 -2.39 -0.02 1.44 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.57 8.10 -2.38 -0.02 1.56 16 31 H 0.34 14.40 4.96 -89.70 -0.44 13.95 16 32 H -0.02 -1.11 7.48 -2.39 -0.02 -1.12 16 33 H 0.02 1.15 6.50 -2.39 -0.02 1.14 16 34 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 Total: -1.00 -66.69 268.59 2.26 -64.43 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.55 Total: 17.96 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 2.65 Total: -36.70 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -2.82 Total: -93.02 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.34 kcal Total: -66.69 2.26 -64.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229672326.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.794 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds